Analysis of interatomic Contacts of Structural Units in PDB entry:
6J1K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J1K entry

There are 2 chains in PDB entry 6J1K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3SER 232
B
 LYS 6ARG 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6J1K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 17Right-handed alpha
Helix 2
AA2
A
30 45Right-handed alpha
Helix 3
AA3
A
56 66Right-handed alpha
Helix 4
AA4
A
102 112Right-handed alpha
Helix 5
AA5
A
121 125Right-handed 310
Helix 6
AA6
A
142 157Right-handed alpha
Helix 7
AA7
A
191 201Right-handed alpha
Helix 8
AA8
B
7 17Right-handed alpha
Helix 9
AA9
B
30 45Right-handed alpha
Helix 10
AB1
B
56 67Right-handed alpha
Helix 11
AB2
B
102 112Right-handed alpha
Helix 12
AB3
B
123 125Right-handed 310
Helix 13
AB4
B
142 157Right-handed alpha
Helix 14
AB5
B
191 201Right-handed alpha
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There are 8 sheets in PDB entry 6J1K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 54first strand
Strand 2
A
24 27parallel
Strand 3
A
81 84parallel
Strand 4
A
116 120parallel
Strand 5
A
217 220parallel
Strand 6
A
227 229anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
A
95 96anti-parallel
Strand 3
A
210 211anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 165first strand
Strand 2
A
180 184anti-parallel
Strand 3
A
134 138anti-parallel
Strand 4
A
205 208anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 168first strand
Strand 2
A
171 172anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 54first strand
Strand 2
B
24 27parallel
Strand 3
B
79 84parallel
Strand 4
B
113 121parallel
Strand 5
B
215 221parallel
Strand 6
B
226 230anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 89first strand
Strand 2
B
95 96anti-parallel
Strand 3
B
210 211anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 165first strand
Strand 2
B
180 184anti-parallel
Strand 3
B
134 138anti-parallel
Strand 4
B
205 208anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 168first strand
Strand 2
B
171 172anti-parallel
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