Analysis of interatomic Contacts of Structural Units in PDB entry:
6J1M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J1M entry

There are 2 chains in PDB entry 6J1M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 11ILE 391
B
 GLU 16ILE 391
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6J1M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 46Right-handed alpha
Helix 2
AA2
A
51 65Right-handed alpha
Helix 3
AA3
A
75 82Right-handed alpha
Helix 4
AA4
A
82 87Right-handed alpha
Helix 5
AA5
A
92 120Right-handed alpha
Helix 6
AA6
A
122 126Right-handed 310
Helix 7
AA7
A
141 151Right-handed alpha
Helix 8
AA8
A
167 183Right-handed alpha
Helix 9
AA9
A
195 199Right-handed 310
Helix 10
AB1
A
209 217Right-handed alpha
Helix 11
AB2
A
251 254Right-handed 310
Helix 12
AB3
A
272 290Right-handed alpha
Helix 13
AB4
A
291 293Right-handed 310
Helix 14
AB5
A
296 300Right-handed 310
Helix 15
AB6
A
308 320Right-handed alpha
Helix 16
AB7
A
326 337Right-handed alpha
Helix 17
AB8
A
339 341Right-handed 310
Helix 18
AB9
A
342 358Right-handed alpha
Helix 19
AC1
B
37 46Right-handed alpha
Helix 20
AC2
B
51 66Right-handed alpha
Helix 21
AC3
B
75 82Right-handed alpha
Helix 22
AC4
B
82 87Right-handed alpha
Helix 23
AC5
B
92 120Right-handed alpha
Helix 24
AC6
B
122 126Right-handed 310
Helix 25
AC7
B
141 151Right-handed alpha
Helix 26
AC8
B
167 183Right-handed alpha
Helix 27
AC9
B
195 199Right-handed 310
Helix 28
AD1
B
209 217Right-handed alpha
Helix 29
AD2
B
251 254Right-handed 310
Helix 30
AD3
B
272 290Right-handed alpha
Helix 31
AD4
B
291 293Right-handed 310
Helix 32
AD5
B
296 300Right-handed 310
Helix 33
AD6
B
308 320Right-handed alpha
Helix 34
AD7
B
326 337Right-handed alpha
Helix 35
AD8
B
339 341Right-handed 310
Helix 36
AD9
B
342 358Right-handed alpha
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There are 8 sheets in PDB entry 6J1M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 162first strand
Strand 2
A
128 133parallel
Strand 3
A
187 194parallel
Strand 4
A
220 227anti-parallel
Strand 5
A
20 27anti-parallel
Strand 6
A
239 248anti-parallel
Strand 7
A
380 388anti-parallel
Strand 8
A
369 376anti-parallel
Strand 9
A
301 304parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
69 71anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 257first strand
Strand 2
A
268 269anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 261first strand
Strand 2
A
264 265anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 162first strand
Strand 2
B
128 133parallel
Strand 3
B
187 194parallel
Strand 4
B
220 227anti-parallel
Strand 5
B
20 27anti-parallel
Strand 6
B
239 248anti-parallel
Strand 7
B
380 388anti-parallel
Strand 8
B
369 376anti-parallel
Strand 9
B
301 304parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 34first strand
Strand 2
B
69 71anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
256 257first strand
Strand 2
B
268 269anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 261first strand
Strand 2
B
264 265anti-parallel
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