Analysis of interatomic Contacts of Structural Units in PDB entry:
6J1R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J1R entry

There are 2 chains in PDB entry 6J1R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET -1PRO 317
A
 ALA 0PRO 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 6J1R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
12 19Right-handed alpha
Helix 2
AA2
B
43 49Right-handed alpha
Helix 3
AA3
B
51 59Right-handed alpha
Helix 4
AA4
B
75 94Right-handed alpha
Helix 5
AA5
B
105 118Right-handed alpha
Helix 6
AA6
B
119 122Right-handed 310
Helix 7
AA7
B
151 157Right-handed alpha
Helix 8
AA8
B
161 171Right-handed alpha
Helix 9
AA9
B
212 217Right-handed alpha
Helix 10
AB1
B
225 230Right-handed alpha
Helix 11
AB2
B
230 243Right-handed alpha
Helix 12
AB3
B
249 253Right-handed 310
Helix 13
AB4
B
254 258Right-handed 310
Helix 14
AB5
B
267 276Right-handed alpha
Helix 15
AB6
B
282 287Right-handed alpha
Helix 16
AB7
B
301 306Right-handed 310
Helix 17
AB8
A
12 19Right-handed alpha
Helix 18
AB9
A
43 49Right-handed alpha
Helix 19
AC1
A
51 59Right-handed alpha
Helix 20
AC2
A
75 94Right-handed alpha
Helix 21
AC3
A
105 118Right-handed alpha
Helix 22
AC4
A
119 123Right-handed 310
Helix 23
AC5
A
143 147Right-handed 310
Helix 24
AC6
A
151 157Right-handed alpha
Helix 25
AC7
A
161 170Right-handed alpha
Helix 26
AC8
A
212 217Right-handed alpha
Helix 27
AC9
A
225 230Right-handed alpha
Helix 28
AD1
A
230 243Right-handed alpha
Helix 29
AD2
A
249 253Right-handed 310
Helix 30
AD3
A
254 258Right-handed 310
Helix 31
AD4
A
267 276Right-handed alpha
Helix 32
AD5
A
278 288Right-handed alpha
Helix 33
AD6
A
301 305Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 6J1R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 22first strand
Strand 2
B
62 66anti-parallel
Strand 3
B
33 37parallel
Strand 4
B
99 104parallel
Strand 5
B
125 131parallel
Strand 6
B
179 183parallel
Strand 7
B
208 211parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
309 310first strand
Strand 2
B
313 314anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 22first strand
Strand 2
A
62 66anti-parallel
Strand 3
A
33 37parallel
Strand 4
A
99 104parallel
Strand 5
A
125 131parallel
Strand 6
A
179 183parallel
Strand 7
A
208 211parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 310first strand
Strand 2
A
313 314anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il