Analysis of interatomic Contacts of Structural Units in PDB entry:
6J1U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J1U entry

There are 3 chains in PDB entry 6J1U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 21PHE 489
B
 ALA 22GLY 490
C
 ASN 21GLU 443
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 6J1U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 47Right-handed alpha
Helix 2
AA2
A
50 55Right-handed alpha
Helix 3
AA3
A
56 71Right-handed alpha
Helix 4
AA4
A
113 124Right-handed alpha
Helix 5
AA5
A
129 148Right-handed alpha
Helix 6
AA6
A
150 156Right-handed alpha
Helix 7
AA7
A
163 167Right-handed 310
Helix 8
AA8
A
177 184Right-handed alpha
Helix 9
AA9
A
185 203Right-handed alpha
Helix 10
AB1
A
210 230Right-handed alpha
Helix 11
AB2
A
232 245Right-handed alpha
Helix 12
AB3
A
249 263Right-handed alpha
Helix 13
AB4
A
277 287Right-handed alpha
Helix 14
AB5
A
290 295Right-handed alpha
Helix 15
AB6
A
301 309Right-handed alpha
Helix 16
AB7
A
321 334Right-handed alpha
Helix 17
AB8
A
340 349Right-handed alpha
Helix 18
AB9
A
354 358Right-handed 310
Helix 19
AC1
A
421 427Right-handed alpha
Helix 20
AC2
A
439 451Right-handed alpha
Helix 21
AC3
B
23 47Right-handed alpha
Helix 22
AC4
B
50 55Right-handed alpha
Helix 23
AC5
B
56 71Right-handed alpha
Helix 24
AC6
B
113 124Right-handed alpha
Helix 25
AC7
B
129 148Right-handed alpha
Helix 26
AC8
B
150 156Right-handed alpha
Helix 27
AC9
B
163 167Right-handed 310
Helix 28
AD1
B
176 184Right-handed alpha
Helix 29
AD2
B
185 203Right-handed alpha
Helix 30
AD3
B
210 230Right-handed alpha
Helix 31
AD4
B
232 245Right-handed alpha
Helix 32
AD5
B
249 263Right-handed alpha
Helix 33
AD6
B
277 287Right-handed alpha
Helix 34
AD7
B
290 295Right-handed alpha
Helix 35
AD8
B
301 309Right-handed alpha
Helix 36
AD9
B
321 334Right-handed alpha
Helix 37
AE1
B
340 349Right-handed alpha
Helix 38
AE2
B
354 358Right-handed 310
Helix 39
AE3
B
370 374Right-handed 310
Helix 40
AE4
B
421 427Right-handed alpha
Helix 41
AE5
B
439 451Right-handed alpha
Helix 42
AE6
C
22 48Right-handed alpha
Helix 43
AE7
C
50 55Right-handed alpha
Helix 44
AE8
C
56 71Right-handed alpha
Helix 45
AE9
C
72 77Right-handed alpha
Helix 46
AF1
C
113 124Right-handed alpha
Helix 47
AF2
C
129 148Right-handed alpha
Helix 48
AF3
C
150 156Right-handed alpha
Helix 49
AF4
C
163 167Right-handed 310
Helix 50
AF5
C
177 184Right-handed alpha
Helix 51
AF6
C
185 203Right-handed alpha
Helix 52
AF7
C
211 228Right-handed alpha
Helix 53
AF8
C
232 244Right-handed alpha
Helix 54
AF9
C
249 263Right-handed alpha
Helix 55
AG1
C
277 287Right-handed alpha
Helix 56
AG2
C
290 295Right-handed alpha
Helix 57
AG3
C
301 309Right-handed alpha
Helix 58
AG4
C
321 334Right-handed alpha
Helix 59
AG5
C
340 349Right-handed alpha
Helix 60
AG6
C
354 358Right-handed 310
Helix 61
AG7
C
370 374Right-handed 310
Helix 62
AG8
C
421 427Right-handed alpha
Helix 63
AG9
C
439 451Right-handed alpha
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There are 9 sheets in PDB entry 6J1U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 100first strand
Strand 2
A
103 112anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 316first strand
Strand 2
A
375 379anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
416 417first strand
Strand 2
B
456 457anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 457first strand
Strand 2
C
416 417anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 100first strand
Strand 2
B
103 112anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 316first strand
Strand 2
B
375 378anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
416 417first strand
Strand 2
C
456 457anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
91 99first strand
Strand 2
C
104 112anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
313 316first strand
Strand 2
C
375 378anti-parallel
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