Analysis of interatomic Contacts of Structural Units in PDB entry:
6J2E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6J2E entry

There are 6 chains in PDB entry 6J2E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	TRP 277
B	ILE 1	MET 99
C	ASP 1	LEU 10
D	GLY 1	TRP 277
E	ILE 1	MET 99
F	ASP 1	LEU 10

There are 14 helices in PDB entry 6J2E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	54	Right-handed alpha
Helix 2	AA2	A	61	89	Right-handed alpha
Helix 3	AA3	A	140	153	Right-handed alpha
Helix 4	AA4	A	154	165	Right-handed alpha
Helix 5	AA5	A	165	178	Right-handed alpha
Helix 6	AA6	A	178	183	Right-handed alpha
Helix 7	AA7	A	256	258	Right-handed 310
Helix 8	AA8	D	49	55	Right-handed alpha
Helix 9	AA9	D	61	89	Right-handed alpha
Helix 10	AB1	D	140	154	Right-handed alpha
Helix 11	AB2	D	154	165	Right-handed alpha
Helix 12	AB3	D	165	178	Right-handed alpha
Helix 13	AB4	D	178	183	Right-handed alpha
Helix 14	AB5	D	256	258	Right-handed 310

There are 14 sheets in PDB entry 6J2E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	A	31	37	anti-parallel
Strand 3	A	18	28	anti-parallel
Strand 4	A	3	14	anti-parallel
Strand 5	A	97	106	anti-parallel
Strand 6	A	112	121	anti-parallel
Strand 7	A	124	129	anti-parallel
Strand 8	A	136	138	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	196	first strand
Strand 2	A	201	211	anti-parallel
Strand 3	A	244	253	anti-parallel
Strand 4	A	232	233	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	196	first strand
Strand 2	A	201	211	anti-parallel
Strand 3	A	244	253	anti-parallel
Strand 4	A	237	238	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	226	first strand
Strand 2	A	217	222	anti-parallel
Strand 3	A	260	265	anti-parallel
Strand 4	A	273	276	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	50	51	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	55	56	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	36	41	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	47	first strand
Strand 2	D	31	37	anti-parallel
Strand 3	D	21	28	anti-parallel
Strand 4	D	3	12	anti-parallel
Strand 5	D	97	106	anti-parallel
Strand 6	D	112	121	anti-parallel
Strand 7	D	124	129	anti-parallel
Strand 8	D	136	138	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	196	first strand
Strand 2	D	201	211	anti-parallel
Strand 3	D	244	253	anti-parallel
Strand 4	D	232	233	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	196	first strand
Strand 2	D	201	211	anti-parallel
Strand 3	D	244	253	anti-parallel
Strand 4	D	237	238	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	225	226	first strand
Strand 2	D	217	222	anti-parallel
Strand 3	D	260	265	anti-parallel
Strand 4	D	273	275	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	11	first strand
Strand 2	E	21	30	anti-parallel
Strand 3	E	62	70	anti-parallel
Strand 4	E	50	51	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	11	first strand
Strand 2	E	21	30	anti-parallel
Strand 3	E	62	70	anti-parallel
Strand 4	E	55	56	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	45	first strand
Strand 2	E	36	41	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	91	94	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6J2E

Analysis of interatomic Contacts of Structural Units in PDB entry:
6J2E