Analysis of interatomic Contacts of Structural Units in PDB entry:
6J2G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J2G entry

There are 6 chains in PDB entry 6J2G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 1TRP 277
B
ILE 1MET 99
C
ASP 1LEU 11
D
GLY 1TRP 277
E
ILE 1MET 99
F
ASP 1LEU 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6J2G. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
49 55Right-handed alpha
Helix 2
AA2
A
61 89Right-handed alpha
Helix 3
AA3
A
140 153Right-handed alpha
Helix 4
AA4
A
154 164Right-handed alpha
Helix 5
AA5
A
165 178Right-handed alpha
Helix 6
AA6
A
178 183Right-handed alpha
Helix 7
AA7
D
49 55Right-handed alpha
Helix 8
AA8
D
62 89Right-handed alpha
Helix 9
AA9
D
140 153Right-handed alpha
Helix 10
AB1
D
154 165Right-handed alpha
Helix 11
AB2
D
165 178Right-handed alpha
Helix 12
AB3
D
178 183Right-handed alpha
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There are 14 sheets in PDB entry 6J2G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
46 47first strand
Strand 2
A
31 37anti-parallel
Strand 3
A
21 28anti-parallel
Strand 4
A
3 12anti-parallel
Strand 5
A
97 106anti-parallel
Strand 6
A
112 121anti-parallel
Strand 7
A
124 129anti-parallel
Strand 8
A
136 138anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
189 196first strand
Strand 2
A
201 211anti-parallel
Strand 3
A
244 253anti-parallel
Strand 4
A
232 233anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
189 196first strand
Strand 2
A
201 211anti-parallel
Strand 3
A
244 253anti-parallel
Strand 4
A
237 238anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
225 226first strand
Strand 2
A
217 222anti-parallel
Strand 3
A
261 265anti-parallel
Strand 4
A
273 275anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
62 70anti-parallel
Strand 4
B
50 51anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
62 70anti-parallel
Strand 4
B
55 56anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
44 45first strand
Strand 2
B
36 41anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
91 94anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
46 47first strand
Strand 2
D
31 37anti-parallel
Strand 3
D
21 28anti-parallel
Strand 4
D
3 12anti-parallel
Strand 5
D
97 106anti-parallel
Strand 6
D
112 121anti-parallel
Strand 7
D
124 129anti-parallel
Strand 8
D
136 138anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
189 196first strand
Strand 2
D
201 211anti-parallel
Strand 3
D
244 253anti-parallel
Strand 4
D
232 233anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
189 196first strand
Strand 2
D
201 211anti-parallel
Strand 3
D
244 253anti-parallel
Strand 4
D
237 238anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
225 226first strand
Strand 2
D
217 222anti-parallel
Strand 3
D
260 265anti-parallel
Strand 4
D
273 275anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
6 11first strand
Strand 2
E
21 30anti-parallel
Strand 3
E
62 70anti-parallel
Strand 4
E
50 51anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
6 11first strand
Strand 2
E
21 30anti-parallel
Strand 3
E
62 70anti-parallel
Strand 4
E
55 56anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
44 45first strand
Strand 2
E
36 41anti-parallel
Strand 3
E
78 83anti-parallel
Strand 4
E
91 94anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il