Analysis of interatomic Contacts of Structural Units in PDB entry:
6J2U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J2U entry

There are 2 chains in PDB entry 6J2U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 38PHE 117
B
 THR 2VAL 274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6J2U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
97 110Right-handed alpha
Helix 2
AA2
B
6 10Right-handed 310
Helix 3
AA3
B
11 28Right-handed alpha
Helix 4
AA4
B
29 45Right-handed alpha
Helix 5
AA5
B
58 78Right-handed alpha
Helix 6
AA6
B
96 100Right-handed 310
Helix 7
AA7
B
121 125Right-handed 310
Helix 8
AA8
B
144 148Right-handed 310
Helix 9
AA9
B
152 161Right-handed alpha
Helix 10
AB1
B
176 183Right-handed alpha
Helix 11
AB2
B
189 198Right-handed alpha
Helix 12
AB3
B
199 203Right-handed 310
Helix 13
AB4
B
205 209Right-handed 310
Helix 14
AB5
B
210 230Right-handed alpha
Helix 15
AB6
B
258 262Right-handed 310
Helix 16
AB7
B
264 268Right-handed 310
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There are 3 sheets in PDB entry 6J2U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
49 54anti-parallel
Strand 3
A
67 70anti-parallel
Strand 4
A
73 75anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
85 87anti-parallel
Strand 3
A
90 95anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 4first strand
Strand 2
B
270 271parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il