Analysis of interatomic Contacts of Structural Units in PDB entry:
6J2V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6J2V entry

There are 4 chains in PDB entry 6J2V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 4	ALA 443
B	LEU 4	ALA 443
C	LEU 4	ALA 443
D	LEU 4	ALA 443

There are 71 helices in PDB entry 6J2V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	34	Right-handed alpha
Helix 2	AA2	A	66	71	Right-handed alpha
Helix 3	AA3	A	78	92	Right-handed alpha
Helix 4	AA4	A	102	116	Right-handed alpha
Helix 5	AA5	A	129	146	Right-handed alpha
Helix 6	AA6	A	161	168	Right-handed alpha
Helix 7	AA7	A	192	197	Right-handed alpha
Helix 8	AA8	A	199	215	Right-handed alpha
Helix 9	AA9	A	216	218	Right-handed 310
Helix 10	AB1	A	240	252	Right-handed alpha
Helix 11	AB2	A	272	278	Right-handed 310
Helix 12	AB3	A	287	292	Right-handed 310
Helix 13	AB4	A	303	307	Right-handed alpha
Helix 14	AB5	A	321	338	Right-handed alpha
Helix 15	AB6	A	339	355	Right-handed alpha
Helix 16	AB7	A	356	361	Right-handed 310
Helix 17	AB8	A	386	400	Right-handed alpha
Helix 18	AB9	A	423	442	Right-handed alpha
Helix 19	AC1	B	20	34	Right-handed alpha
Helix 20	AC2	B	66	71	Right-handed alpha
Helix 21	AC3	B	78	90	Right-handed alpha
Helix 22	AC4	B	102	116	Right-handed alpha
Helix 23	AC5	B	129	146	Right-handed alpha
Helix 24	AC6	B	161	168	Right-handed alpha
Helix 25	AC7	B	192	197	Right-handed alpha
Helix 26	AC8	B	199	215	Right-handed alpha
Helix 27	AC9	B	216	218	Right-handed 310
Helix 28	AD1	B	240	252	Right-handed alpha
Helix 29	AD2	B	272	278	Right-handed 310
Helix 30	AD3	B	287	292	Right-handed 310
Helix 31	AD4	B	303	307	Right-handed alpha
Helix 32	AD5	B	321	338	Right-handed alpha
Helix 33	AD6	B	339	355	Right-handed alpha
Helix 34	AD7	B	356	361	Right-handed 310
Helix 35	AD8	B	386	400	Right-handed alpha
Helix 36	AD9	B	423	443	Right-handed alpha
Helix 37	AE1	C	20	34	Right-handed alpha
Helix 38	AE2	C	66	71	Right-handed alpha
Helix 39	AE3	C	78	92	Right-handed alpha
Helix 40	AE4	C	102	116	Right-handed alpha
Helix 41	AE5	C	129	146	Right-handed alpha
Helix 42	AE6	C	161	168	Right-handed alpha
Helix 43	AE7	C	192	197	Right-handed alpha
Helix 44	AE8	C	199	215	Right-handed alpha
Helix 45	AE9	C	216	218	Right-handed 310
Helix 46	AF1	C	240	252	Right-handed alpha
Helix 47	AF2	C	272	278	Right-handed 310
Helix 48	AF3	C	287	292	Right-handed 310
Helix 49	AF4	C	303	307	Right-handed alpha
Helix 50	AF5	C	321	338	Right-handed alpha
Helix 51	AF6	C	339	355	Right-handed alpha
Helix 52	AF7	C	357	361	Right-handed 310
Helix 53	AF8	C	386	401	Right-handed alpha
Helix 54	AF9	C	423	443	Right-handed alpha
Helix 55	AG1	D	20	34	Right-handed alpha
Helix 56	AG2	D	66	71	Right-handed alpha
Helix 57	AG3	D	78	90	Right-handed alpha
Helix 58	AG4	D	102	116	Right-handed alpha
Helix 59	AG5	D	129	146	Right-handed alpha
Helix 60	AG6	D	161	168	Right-handed alpha
Helix 61	AG7	D	192	197	Right-handed alpha
Helix 62	AG8	D	199	215	Right-handed alpha
Helix 63	AG9	D	216	218	Right-handed 310
Helix 64	AH1	D	240	252	Right-handed alpha
Helix 65	AH2	D	272	278	Right-handed 310
Helix 66	AH3	D	287	292	Right-handed 310
Helix 67	AH4	D	303	307	Right-handed alpha
Helix 68	AH5	D	321	338	Right-handed alpha
Helix 69	AH6	D	339	355	Right-handed alpha
Helix 70	AH7	D	386	400	Right-handed alpha
Helix 71	AH8	D	423	442	Right-handed alpha

There are 12 sheets in PDB entry 6J2V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	50	first strand
Strand 2	A	53	56	anti-parallel
Strand 3	A	61	64	anti-parallel
Strand 4	A	402	403	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	127	first strand
Strand 2	A	297	302	anti-parallel
Strand 3	A	283	286	anti-parallel
Strand 4	A	255	259	parallel
Strand 5	A	220	225	parallel
Strand 6	A	149	153	parallel
Strand 7	A	185	188	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	370	first strand
Strand 2	A	373	378	anti-parallel
Strand 3	A	413	416	anti-parallel
Strand 4	A	405	407	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	50	first strand
Strand 2	B	53	56	anti-parallel
Strand 3	B	61	64	anti-parallel
Strand 4	B	402	403	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	127	first strand
Strand 2	B	297	302	anti-parallel
Strand 3	B	283	286	anti-parallel
Strand 4	B	255	259	parallel
Strand 5	B	220	225	parallel
Strand 6	B	149	153	parallel
Strand 7	B	185	188	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	370	first strand
Strand 2	B	373	378	anti-parallel
Strand 3	B	413	416	anti-parallel
Strand 4	B	405	407	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	50	first strand
Strand 2	C	53	56	anti-parallel
Strand 3	C	61	64	anti-parallel
Strand 4	C	402	403	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	127	first strand
Strand 2	C	297	302	anti-parallel
Strand 3	C	283	286	anti-parallel
Strand 4	C	255	259	parallel
Strand 5	C	220	225	parallel
Strand 6	C	149	153	parallel
Strand 7	C	185	188	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	364	370	first strand
Strand 2	C	373	378	anti-parallel
Strand 3	C	413	416	anti-parallel
Strand 4	C	405	407	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	50	first strand
Strand 2	D	53	56	anti-parallel
Strand 3	D	61	64	anti-parallel
Strand 4	D	402	403	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	127	first strand
Strand 2	D	297	302	anti-parallel
Strand 3	D	283	286	anti-parallel
Strand 4	D	255	259	parallel
Strand 5	D	220	225	parallel
Strand 6	D	149	153	parallel
Strand 7	D	185	188	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	364	370	first strand
Strand 2	D	373	378	anti-parallel
Strand 3	D	413	416	anti-parallel
Strand 4	D	405	407	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6J2V

Analysis of interatomic Contacts of Structural Units in PDB entry:
6J2V