Analysis of interatomic Contacts of Structural Units in PDB entry:
6J31

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6J31 entry

There are 4 chains in PDB entry 6J31 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	PRO 395
B	MET 1	PRO 395
C	PRO 2	PRO 395
D	PRO 2	GLU 146

There are 74 helices in PDB entry 6J31. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	20	Right-handed 310
Helix 2	AA2	A	21	31	Right-handed alpha
Helix 3	AA3	A	40	42	Right-handed 310
Helix 4	AA4	A	43	50	Right-handed alpha
Helix 5	AA5	A	73	97	Right-handed alpha
Helix 6	AA6	A	111	121	Right-handed alpha
Helix 7	AA7	A	136	141	Right-handed alpha
Helix 8	AA8	A	141	151	Right-handed alpha
Helix 9	AA9	A	151	168	Right-handed alpha
Helix 10	AB1	A	176	181	Right-handed alpha
Helix 11	AB2	A	190	194	Right-handed 310
Helix 12	AB3	A	196	200	Right-handed 310
Helix 13	AB4	A	242	254	Right-handed alpha
Helix 14	AB5	A	288	295	Right-handed alpha
Helix 15	AB6	A	304	315	Right-handed alpha
Helix 16	AB7	A	326	337	Right-handed alpha
Helix 17	AB8	A	349	363	Right-handed alpha
Helix 18	AB9	A	363	379	Right-handed alpha
Helix 19	AC1	A	381	392	Right-handed alpha
Helix 20	AC2	B	14	20	Right-handed 310
Helix 21	AC3	B	21	31	Right-handed alpha
Helix 22	AC4	B	40	42	Right-handed 310
Helix 23	AC5	B	43	50	Right-handed alpha
Helix 24	AC6	B	73	97	Right-handed alpha
Helix 25	AC7	B	111	121	Right-handed alpha
Helix 26	AC8	B	134	151	Right-handed alpha
Helix 27	AC9	B	151	168	Right-handed alpha
Helix 28	AD1	B	176	181	Right-handed alpha
Helix 29	AD2	B	190	194	Right-handed 310
Helix 30	AD3	B	196	200	Right-handed 310
Helix 31	AD4	B	243	254	Right-handed alpha
Helix 32	AD5	B	288	295	Right-handed alpha
Helix 33	AD6	B	304	315	Right-handed alpha
Helix 34	AD7	B	326	337	Right-handed alpha
Helix 35	AD8	B	349	363	Right-handed alpha
Helix 36	AD9	B	363	379	Right-handed alpha
Helix 37	AE1	B	381	392	Right-handed alpha
Helix 38	AE2	C	14	17	Right-handed 310
Helix 39	AE3	C	18	31	Right-handed alpha
Helix 40	AE4	C	40	42	Right-handed 310
Helix 41	AE5	C	43	50	Right-handed alpha
Helix 42	AE6	C	73	97	Right-handed alpha
Helix 43	AE7	C	111	121	Right-handed alpha
Helix 44	AE8	C	134	151	Right-handed alpha
Helix 45	AE9	C	151	168	Right-handed alpha
Helix 46	AF1	C	176	181	Right-handed alpha
Helix 47	AF2	C	190	194	Right-handed 310
Helix 48	AF3	C	196	200	Right-handed 310
Helix 49	AF4	C	242	254	Right-handed alpha
Helix 50	AF5	C	288	294	Right-handed alpha
Helix 51	AF6	C	304	315	Right-handed alpha
Helix 52	AF7	C	326	337	Right-handed alpha
Helix 53	AF8	C	349	363	Right-handed alpha
Helix 54	AF9	C	363	379	Right-handed alpha
Helix 55	AG1	C	381	392	Right-handed alpha
Helix 56	AG2	D	14	20	Right-handed 310
Helix 57	AG3	D	21	31	Right-handed alpha
Helix 58	AG4	D	40	42	Right-handed 310
Helix 59	AG5	D	43	50	Right-handed alpha
Helix 60	AG6	D	73	97	Right-handed alpha
Helix 61	AG7	D	111	120	Right-handed alpha
Helix 62	AG8	D	136	141	Right-handed alpha
Helix 63	AG9	D	141	151	Right-handed alpha
Helix 64	AH1	D	151	168	Right-handed alpha
Helix 65	AH2	D	176	181	Right-handed alpha
Helix 66	AH3	D	190	194	Right-handed 310
Helix 67	AH4	D	196	200	Right-handed 310
Helix 68	AH5	D	242	254	Right-handed alpha
Helix 69	AH6	D	288	294	Right-handed alpha
Helix 70	AH7	D	304	315	Right-handed alpha
Helix 71	AH8	D	326	337	Right-handed alpha
Helix 72	AH9	D	349	363	Right-handed alpha
Helix 73	AI1	D	363	379	Right-handed alpha
Helix 74	AI2	D	381	393	Right-handed alpha

There are 8 sheets in PDB entry 6J31. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	34	39	parallel
Strand 3	A	6	10	parallel
Strand 4	A	103	107	parallel
Strand 5	A	124	128	parallel
Strand 6	A	185	187	parallel
Strand 7	A	205	207	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	284	first strand
Strand 2	A	259	264	parallel
Strand 3	A	229	234	parallel
Strand 4	A	298	301	parallel
Strand 5	A	318	320	parallel
Strand 6	A	340	342	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	56	first strand
Strand 2	B	34	39	parallel
Strand 3	B	6	10	parallel
Strand 4	B	103	107	parallel
Strand 5	B	124	128	parallel
Strand 6	B	185	187	parallel
Strand 7	B	205	207	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	284	first strand
Strand 2	B	259	264	parallel
Strand 3	B	229	234	parallel
Strand 4	B	298	301	parallel
Strand 5	B	318	320	parallel
Strand 6	B	340	342	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	56	first strand
Strand 2	C	34	39	parallel
Strand 3	C	6	10	parallel
Strand 4	C	103	107	parallel
Strand 5	C	124	128	parallel
Strand 6	C	185	187	parallel
Strand 7	C	205	207	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	281	284	first strand
Strand 2	C	259	264	parallel
Strand 3	C	229	234	parallel
Strand 4	C	298	301	parallel
Strand 5	C	318	320	parallel
Strand 6	C	340	342	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	56	first strand
Strand 2	D	34	39	parallel
Strand 3	D	6	10	parallel
Strand 4	D	103	107	parallel
Strand 5	D	124	128	parallel
Strand 6	D	185	187	parallel
Strand 7	D	205	207	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	281	284	first strand
Strand 2	D	259	264	parallel
Strand 3	D	229	234	parallel
Strand 4	D	298	301	parallel
Strand 5	D	318	320	parallel
Strand 6	D	340	342	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6J31

Analysis of interatomic Contacts of Structural Units in PDB entry:
6J31