Analysis of interatomic Contacts of Structural Units in PDB entry:
6J35

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6J35 entry

There are 2 chains in PDB entry 6J35 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 32	LYS 1083
B	MET 31	LYS 1083

There are 87 helices in PDB entry 6J35. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	60	66	Right-handed alpha
Helix 2	AA2	A	71	73	Right-handed 310
Helix 3	AA3	A	163	172	Right-handed alpha
Helix 4	AA4	A	190	193	Right-handed 310
Helix 5	AA5	A	229	236	Right-handed alpha
Helix 6	AA6	A	237	240	Right-handed 310
Helix 7	AA7	A	252	258	Right-handed alpha
Helix 8	AA8	A	280	294	Right-handed alpha
Helix 9	AA9	A	349	353	Right-handed 310
Helix 10	AB1	A	385	389	Right-handed 310
Helix 11	AB2	A	398	402	Right-handed 310
Helix 12	AB3	A	405	409	Right-handed 310
Helix 13	AB4	A	417	423	Right-handed alpha
Helix 14	AB5	A	430	436	Right-handed alpha
Helix 15	AB6	A	442	446	Right-handed 310
Helix 16	AB7	A	448	454	Right-handed 310
Helix 17	AB8	A	457	469	Right-handed alpha
Helix 18	AB9	A	488	492	Right-handed 310
Helix 19	AC1	A	498	506	Right-handed alpha
Helix 20	AC2	A	506	511	Right-handed alpha
Helix 21	AC3	A	512	518	Right-handed 310
Helix 22	AC4	A	523	532	Right-handed alpha
Helix 23	AC5	A	540	550	Right-handed alpha
Helix 24	AC6	A	578	594	Right-handed alpha
Helix 25	AC7	A	619	624	Right-handed alpha
Helix 26	AC8	A	651	670	Right-handed alpha
Helix 27	AC9	A	678	682	Right-handed 310
Helix 28	AD1	A	683	698	Right-handed alpha
Helix 29	AD2	A	733	742	Right-handed alpha
Helix 30	AD3	A	750	755	Right-handed alpha
Helix 31	AD4	A	757	761	Right-handed 310
Helix 32	AD5	A	773	789	Right-handed alpha
Helix 33	AD6	A	822	824	Right-handed 310
Helix 34	AD7	A	837	846	Right-handed alpha
Helix 35	AD8	A	851	868	Right-handed alpha
Helix 36	AD9	A	878	882	Right-handed 310
Helix 37	AE1	A	894	900	Right-handed alpha
Helix 38	AE2	A	916	921	Right-handed alpha
Helix 39	AE3	A	923	931	Right-handed alpha
Helix 40	AE4	A	938	959	Right-handed alpha
Helix 41	AE5	A	960	964	Right-handed 310
Helix 42	AE6	A	966	973	Right-handed alpha
Helix 43	AE7	A	1033	1040	Right-handed alpha
Helix 44	AE8	A	1041	1043	Right-handed 310
Helix 45	AE9	B	163	172	Right-handed alpha
Helix 46	AF1	B	190	193	Right-handed 310
Helix 47	AF2	B	229	236	Right-handed alpha
Helix 48	AF3	B	237	240	Right-handed 310
Helix 49	AF4	B	252	258	Right-handed alpha
Helix 50	AF5	B	280	294	Right-handed alpha
Helix 51	AF6	B	349	353	Right-handed 310
Helix 52	AF7	B	385	389	Right-handed 310
Helix 53	AF8	B	398	402	Right-handed 310
Helix 54	AF9	B	405	409	Right-handed 310
Helix 55	AG1	B	417	423	Right-handed alpha
Helix 56	AG2	B	430	436	Right-handed alpha
Helix 57	AG3	B	442	446	Right-handed 310
Helix 58	AG4	B	448	454	Right-handed 310
Helix 59	AG5	B	457	469	Right-handed alpha
Helix 60	AG6	B	488	492	Right-handed 310
Helix 61	AG7	B	498	506	Right-handed alpha
Helix 62	AG8	B	506	511	Right-handed alpha
Helix 63	AG9	B	514	518	Right-handed 310
Helix 64	AH1	B	523	532	Right-handed alpha
Helix 65	AH2	B	540	550	Right-handed alpha
Helix 66	AH3	B	578	594	Right-handed alpha
Helix 67	AH4	B	619	624	Right-handed alpha
Helix 68	AH5	B	651	668	Right-handed alpha
Helix 69	AH6	B	678	682	Right-handed 310
Helix 70	AH7	B	683	696	Right-handed alpha
Helix 71	AH8	B	710	715	Right-handed 310
Helix 72	AH9	B	733	742	Right-handed alpha
Helix 73	AI1	B	749	755	Right-handed alpha
Helix 74	AI2	B	757	761	Right-handed 310
Helix 75	AI3	B	773	789	Right-handed alpha
Helix 76	AI4	B	822	824	Right-handed 310
Helix 77	AI5	B	837	846	Right-handed alpha
Helix 78	AI6	B	851	868	Right-handed alpha
Helix 79	AI7	B	878	882	Right-handed 310
Helix 80	AI8	B	894	900	Right-handed alpha
Helix 81	AI9	B	916	921	Right-handed alpha
Helix 82	AJ1	B	923	931	Right-handed alpha
Helix 83	AJ2	B	938	959	Right-handed alpha
Helix 84	AJ3	B	960	964	Right-handed 310
Helix 85	AJ4	B	966	973	Right-handed alpha
Helix 86	AJ5	B	1033	1040	Right-handed alpha
Helix 87	AJ6	B	1041	1043	Right-handed 310

There are 28 sheets in PDB entry 6J35. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	106	first strand
Strand 2	A	109	115	anti-parallel
Strand 3	A	53	59	anti-parallel
Strand 4	A	150	154	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	80	first strand
Strand 2	A	122	129	anti-parallel
Strand 3	A	132	133	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	80	first strand
Strand 2	A	122	129	anti-parallel
Strand 3	A	139	142	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	183	first strand
Strand 2	A	186	188	anti-parallel
Strand 3	A	244	246	anti-parallel
Strand 4	A	219	226	anti-parallel
Strand 5	A	197	203	anti-parallel
Strand 6	A	260	266	anti-parallel
Strand 7	A	272	279	anti-parallel
Strand 8	A	179	183	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	302	first strand
Strand 2	A	305	311	anti-parallel
Strand 3	A	343	348	anti-parallel
Strand 4	A	336	337	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	334	first strand
Strand 2	A	317	323	anti-parallel
Strand 3	A	356	365	anti-parallel
Strand 4	A	370	376	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	334	first strand
Strand 2	A	317	323	anti-parallel
Strand 3	A	356	365	anti-parallel
Strand 4	A	391	392	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	429	first strand
Strand 2	A	473	476	parallel
Strand 3	A	598	603	parallel
Strand 4	A	673	676	parallel
Strand 5	A	702	705	parallel
Strand 6	A	730	732	parallel
Strand 7	A	826	828	parallel
Strand 8	A	872	876	parallel
Strand 9	A	425	429	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	480	482	first strand
Strand 2	A	561	567	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	607	608	first strand
Strand 2	A	645	646	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	796	798	first strand
Strand 2	A	804	806	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	811	812	first strand
Strand 2	A	815	816	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	974	977	first strand
Strand 2	A	987	993	anti-parallel
Strand 3	A	1006	1014	anti-parallel
Strand 4	A	1062	1069	anti-parallel
Strand 5	A	1031	1032	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1020	1022	first strand
Strand 2	A	1056	1058	anti-parallel
Strand 3	A	1049	1050	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	106	first strand
Strand 2	B	109	115	anti-parallel
Strand 3	B	53	58	anti-parallel
Strand 4	B	150	153	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	80	first strand
Strand 2	B	122	129	anti-parallel
Strand 3	B	132	133	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	80	first strand
Strand 2	B	122	129	anti-parallel
Strand 3	B	139	142	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	183	first strand
Strand 2	B	186	188	anti-parallel
Strand 3	B	244	246	anti-parallel
Strand 4	B	219	226	anti-parallel
Strand 5	B	197	203	anti-parallel
Strand 6	B	260	266	anti-parallel
Strand 7	B	272	279	anti-parallel
Strand 8	B	179	183	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	301	first strand
Strand 2	B	306	311	anti-parallel
Strand 3	B	343	348	anti-parallel
Strand 4	B	336	337	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	334	first strand
Strand 2	B	317	323	anti-parallel
Strand 3	B	356	365	anti-parallel
Strand 4	B	370	376	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	334	first strand
Strand 2	B	317	323	anti-parallel
Strand 3	B	356	365	anti-parallel
Strand 4	B	391	392	anti-parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	425	429	first strand
Strand 2	B	473	476	parallel
Strand 3	B	598	603	parallel
Strand 4	B	673	676	parallel
Strand 5	B	702	705	parallel
Strand 6	B	730	732	parallel
Strand 7	B	826	828	parallel
Strand 8	B	872	876	parallel
Strand 9	B	425	429	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	480	482	first strand
Strand 2	B	561	567	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	607	608	first strand
Strand 2	B	645	646	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	796	798	first strand
Strand 2	B	804	806	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	811	812	first strand
Strand 2	B	815	816	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	974	977	first strand
Strand 2	B	987	993	anti-parallel
Strand 3	B	1006	1014	anti-parallel
Strand 4	B	1062	1069	anti-parallel
Strand 5	B	1031	1032	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1020	1022	first strand
Strand 2	B	1056	1058	anti-parallel
Strand 3	B	1049	1050	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6J35

Analysis of interatomic Contacts of Structural Units in PDB entry:
6J35