Analysis of interatomic Contacts of Structural Units in PDB entry:
6J36


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J36 entry

There are 2 chains in PDB entry 6J36 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2HIS 460
B
 SER 2HIS 457
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6J36. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 66Right-handed 310
Helix 2
AA2
A
68 78Right-handed alpha
Helix 3
AA3
A
78 84Right-handed alpha
Helix 4
AA4
A
90 103Right-handed alpha
Helix 5
AA5
A
111 130Right-handed alpha
Helix 6
AA6
A
133 140Right-handed alpha
Helix 7
AA7
A
178 200Right-handed alpha
Helix 8
AA8
A
218 233Right-handed alpha
Helix 9
AA9
A
252 257Right-handed 310
Helix 10
AB1
A
264 272Right-handed alpha
Helix 11
AB2
A
286 301Right-handed alpha
Helix 12
AB3
A
314 326Right-handed alpha
Helix 13
AB4
A
340 351Right-handed alpha
Helix 14
AB5
A
359 364Right-handed alpha
Helix 15
AB6
A
365 379Right-handed alpha
Helix 16
AB7
A
395 404Right-handed alpha
Helix 17
AB8
A
416 437Right-handed alpha
Helix 18
AB9
A
442 447Right-handed 310
Helix 19
AC1
B
62 66Right-handed 310
Helix 20
AC2
B
68 78Right-handed alpha
Helix 21
AC3
B
78 84Right-handed alpha
Helix 22
AC4
B
90 103Right-handed alpha
Helix 23
AC5
B
111 130Right-handed alpha
Helix 24
AC6
B
133 140Right-handed alpha
Helix 25
AC7
B
178 200Right-handed alpha
Helix 26
AC8
B
218 233Right-handed alpha
Helix 27
AC9
B
252 257Right-handed 310
Helix 28
AD1
B
264 271Right-handed alpha
Helix 29
AD2
B
286 301Right-handed alpha
Helix 30
AD3
B
314 326Right-handed alpha
Helix 31
AD4
B
340 350Right-handed alpha
Helix 32
AD5
B
359 364Right-handed alpha
Helix 33
AD6
B
365 379Right-handed alpha
Helix 34
AD7
B
395 404Right-handed alpha
Helix 35
AD8
B
416 437Right-handed alpha
Helix 36
AD9
B
442 447Right-handed 310
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There are 8 sheets in PDB entry 6J36. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 13first strand
Strand 2
A
19 27anti-parallel
Strand 3
A
32 36anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
408 410parallel
Strand 3
A
382 386parallel
Strand 4
A
355 358parallel
Strand 5
A
330 333parallel
Strand 6
A
303 307parallel
Strand 7
A
244 250parallel
Strand 8
A
168 173anti-parallel
Strand 9
A
151 155anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
408 410parallel
Strand 3
A
382 386parallel
Strand 4
A
355 358parallel
Strand 5
A
330 333parallel
Strand 6
A
303 307parallel
Strand 7
A
244 250parallel
Strand 8
A
236 237parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
284 285anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 13first strand
Strand 2
B
19 27anti-parallel
Strand 3
B
32 36anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 149first strand
Strand 2
B
408 410parallel
Strand 3
B
382 386parallel
Strand 4
B
355 358parallel
Strand 5
B
330 333parallel
Strand 6
B
303 307parallel
Strand 7
B
244 250parallel
Strand 8
B
168 173anti-parallel
Strand 9
B
151 155anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 149first strand
Strand 2
B
408 410parallel
Strand 3
B
382 386parallel
Strand 4
B
355 358parallel
Strand 5
B
330 333parallel
Strand 6
B
303 307parallel
Strand 7
B
244 250parallel
Strand 8
B
236 237parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 263first strand
Strand 2
B
284 285anti-parallel
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