Analysis of interatomic Contacts of Structural Units in PDB entry:
6J38


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J38 entry

There are 2 chains in PDB entry 6J38 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 368
B
 MET 1PHE 368
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6J38. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 22Right-handed alpha
Helix 2
AA2
A
36 41Right-handed alpha
Helix 3
AA3
A
49 53Right-handed 310
Helix 4
AA4
A
55 81Right-handed alpha
Helix 5
AA5
A
97 112Right-handed alpha
Helix 6
AA6
A
123 130Right-handed alpha
Helix 7
AA7
A
150 165Right-handed alpha
Helix 8
AA8
A
203 210Right-handed 310
Helix 9
AA9
A
277 292Right-handed alpha
Helix 10
AB1
A
293 298Right-handed 310
Helix 11
AB2
A
335 354Right-handed alpha
Helix 12
AB3
A
357 368Right-handed 310
Helix 13
AB4
B
9 22Right-handed alpha
Helix 14
AB5
B
36 41Right-handed alpha
Helix 15
AB6
B
56 81Right-handed alpha
Helix 16
AB7
B
97 112Right-handed alpha
Helix 17
AB8
B
123 130Right-handed alpha
Helix 18
AB9
B
150 165Right-handed alpha
Helix 19
AC1
B
203 210Right-handed 310
Helix 20
AC2
B
277 292Right-handed alpha
Helix 21
AC3
B
293 298Right-handed 310
Helix 22
AC4
B
332 334Right-handed 310
Helix 23
AC5
B
335 354Right-handed alpha
Helix 24
AC6
B
357 368Right-handed 310
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There are 8 sheets in PDB entry 6J38. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 170first strand
Strand 2
A
25 29parallel
Strand 3
A
2 6parallel
Strand 4
A
198 201parallel
Strand 5
A
326 330parallel
Strand 6
A
317 320anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
147 149anti-parallel
Strand 3
A
86 87anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 122first strand
Strand 2
A
139 143anti-parallel
Strand 3
A
91 95anti-parallel
Strand 4
A
242 246parallel
Strand 5
A
249 255anti-parallel
Strand 6
A
260 264anti-parallel
Strand 7
A
223 232anti-parallel
Strand 8
A
299 309anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 178first strand
Strand 2
A
185 188anti-parallel
Strand 3
A
193 195anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 170first strand
Strand 2
B
25 29parallel
Strand 3
B
2 6parallel
Strand 4
B
198 201parallel
Strand 5
B
326 330parallel
Strand 6
B
317 320anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
147 149anti-parallel
Strand 3
B
86 87anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 122first strand
Strand 2
B
139 143anti-parallel
Strand 3
B
91 95anti-parallel
Strand 4
B
242 245parallel
Strand 5
B
251 255anti-parallel
Strand 6
B
260 264anti-parallel
Strand 7
B
223 232anti-parallel
Strand 8
B
299 309anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 178first strand
Strand 2
B
185 188anti-parallel
Strand 3
B
193 195anti-parallel
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