Analysis of interatomic Contacts of Structural Units in PDB entry:
6J3D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J3D entry

There are 2 chains in PDB entry 6J3D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 20GLY 252
B
 SER 20GLU 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6J3D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 33Right-handed alpha
Helix 2
AA2
A
44 49Right-handed alpha
Helix 3
AA3
A
57 60Right-handed 310
Helix 4
AA4
A
110 121Right-handed alpha
Helix 5
AA5
A
153 158Right-handed alpha
Helix 6
AA6
A
159 161Right-handed 310
Helix 7
AA7
A
179 183Right-handed 310
Helix 8
AA8
A
230 236Right-handed alpha
Helix 9
AA9
A
242 252Right-handed alpha
Helix 10
AB1
B
27 33Right-handed alpha
Helix 11
AB2
B
43 48Right-handed 310
Helix 12
AB3
B
57 60Right-handed 310
Helix 13
AB4
B
110 121Right-handed alpha
Helix 14
AB5
B
153 158Right-handed alpha
Helix 15
AB6
B
179 183Right-handed 310
Helix 16
AB7
B
230 236Right-handed alpha
Helix 17
AB8
B
242 251Right-handed alpha
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There are 5 sheets in PDB entry 6J3D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 81first strand
Strand 2
A
69 74anti-parallel
Strand 3
A
62 66anti-parallel
Strand 4
A
51 55anti-parallel
Strand 5
A
91 94anti-parallel
Strand 6
A
21 25anti-parallel
Strand 7
A
222 226parallel
Strand 8
B
222 226anti-parallel
Strand 9
B
21 25parallel
Strand 10
B
91 94anti-parallel
Strand 11
B
51 55anti-parallel
Strand 12
B
62 66anti-parallel
Strand 13
B
69 73anti-parallel
Strand 14
B
79 81anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
87 88anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 104first strand
Strand 2
A
108 109first strand
Strand 3
A
127 142first strand
Strand 4
A
163 178anti-parallel
Strand 5
A
189 196anti-parallel
Strand 6
A
202 220anti-parallel
Strand 7
A
108 109anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 41first strand
Strand 2
B
87 88anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 104first strand
Strand 2
B
108 109first strand
Strand 3
B
127 142first strand
Strand 4
B
163 178anti-parallel
Strand 5
B
189 196anti-parallel
Strand 6
B
202 220anti-parallel
Strand 7
B
108 109anti-parallel
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