Analysis of interatomic Contacts of Structural Units in PDB entry:
6J3E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J3E entry

There are 2 chains in PDB entry 6J3E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3ALA 256
B
 ASN 3ALA 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 6J3E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 35Right-handed alpha
Helix 2
AA2
A
44 46Right-handed 310
Helix 3
AA3
A
47 56Right-handed alpha
Helix 4
AA4
A
85 97Right-handed alpha
Helix 5
AA5
A
105 107Right-handed 310
Helix 6
AA6
A
108 123Right-handed alpha
Helix 7
AA7
A
123 137Right-handed alpha
Helix 8
AA8
A
140 154Right-handed alpha
Helix 9
AA9
A
159 163Right-handed 310
Helix 10
AB1
A
168 190Right-handed alpha
Helix 11
AB2
A
205 223Right-handed alpha
Helix 12
AB3
A
226 233Right-handed alpha
Helix 13
AB4
A
234 248Right-handed alpha
Helix 14
AB5
A
249 251Right-handed 310
Helix 15
AB6
B
21 35Right-handed alpha
Helix 16
AB7
B
44 46Right-handed 310
Helix 17
AB8
B
47 56Right-handed alpha
Helix 18
AB9
B
85 97Right-handed alpha
Helix 19
AC1
B
105 107Right-handed 310
Helix 20
AC2
B
108 123Right-handed alpha
Helix 21
AC3
B
123 138Right-handed alpha
Helix 22
AC4
B
140 155Right-handed alpha
Helix 23
AC5
B
159 163Right-handed 310
Helix 24
AC6
B
168 189Right-handed alpha
Helix 25
AC7
B
205 223Right-handed alpha
Helix 26
AC8
B
226 233Right-handed alpha
Helix 27
AC9
B
234 237Right-handed 310
Helix 28
AD1
B
238 248Right-handed alpha
Helix 29
AD2
B
249 251Right-handed 310
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There are 4 sheets in PDB entry 6J3E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 42first strand
Strand 2
A
5 9parallel
Strand 3
A
73 75anti-parallel
Strand 4
A
82 84anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
66 68anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 42first strand
Strand 2
B
5 9parallel
Strand 3
B
73 75anti-parallel
Strand 4
B
82 84anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
66 68anti-parallel
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