Analysis of interatomic Contacts of Structural Units in PDB entry:
6J4Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6J4Q entry

There are 8 chains in PDB entry 6J4Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 49	LEU 295
B	ALA 27	LYS 59
C	PHE 49	LYS 293
D	SER 26	LYS 59
F	PHE 49	ILE 294
G	ALA 27	CYS 58
J	PHE 49	LEU 295
K	GLN 29	PHE 57

There are 38 helices in PDB entry 6J4Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	59	74	Right-handed alpha
Helix 2	AA2	A	78	86	Right-handed alpha
Helix 3	AA3	A	106	122	Right-handed alpha
Helix 4	AA4	A	138	153	Right-handed alpha
Helix 5	AA5	A	157	170	Right-handed alpha
Helix 6	AA6	A	212	216	Right-handed 310
Helix 7	AA7	A	224	239	Right-handed alpha
Helix 8	AA8	A	275	292	Right-handed alpha
Helix 9	AA9	B	28	59	Right-handed alpha
Helix 10	AB1	C	59	74	Right-handed alpha
Helix 11	AB2	C	76	86	Right-handed alpha
Helix 12	AB3	C	106	122	Right-handed alpha
Helix 13	AB4	C	138	153	Right-handed alpha
Helix 14	AB5	C	157	170	Right-handed alpha
Helix 15	AB6	C	212	216	Right-handed 310
Helix 16	AB7	C	224	239	Right-handed alpha
Helix 17	AB8	C	272	274	Right-handed 310
Helix 18	AB9	C	275	293	Right-handed alpha
Helix 19	AC1	D	27	57	Right-handed alpha
Helix 20	AC2	F	59	74	Right-handed alpha
Helix 21	AC3	F	79	86	Right-handed alpha
Helix 22	AC4	F	106	122	Right-handed alpha
Helix 23	AC5	F	138	153	Right-handed alpha
Helix 24	AC6	F	157	169	Right-handed alpha
Helix 25	AC7	F	212	216	Right-handed 310
Helix 26	AC8	F	224	238	Right-handed alpha
Helix 27	AC9	F	270	274	Right-handed 310
Helix 28	AD1	F	275	292	Right-handed alpha
Helix 29	AD2	G	28	55	Right-handed alpha
Helix 30	AD3	J	59	74	Right-handed alpha
Helix 31	AD4	J	78	86	Right-handed alpha
Helix 32	AD5	J	106	122	Right-handed alpha
Helix 33	AD6	J	138	153	Right-handed alpha
Helix 34	AD7	J	157	170	Right-handed alpha
Helix 35	AD8	J	212	216	Right-handed 310
Helix 36	AD9	J	224	239	Right-handed alpha
Helix 37	AE1	J	275	292	Right-handed alpha
Helix 38	AE2	K	30	57	Right-handed alpha

There are 8 sheets in PDB entry 6J4Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	51	first strand
Strand 2	A	128	129	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	222	first strand
Strand 2	A	203	207	anti-parallel
Strand 3	A	189	200	anti-parallel
Strand 4	A	176	186	anti-parallel
Strand 5	A	242	248	anti-parallel
Strand 6	A	267	269	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	51	first strand
Strand 2	C	128	129	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	222	first strand
Strand 2	C	204	207	anti-parallel
Strand 3	C	189	200	anti-parallel
Strand 4	C	175	186	anti-parallel
Strand 5	C	242	248	anti-parallel
Strand 6	C	267	270	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	50	51	first strand
Strand 2	F	128	129	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	218	222	first strand
Strand 2	F	203	207	anti-parallel
Strand 3	F	189	200	anti-parallel
Strand 4	F	176	186	anti-parallel
Strand 5	F	242	248	anti-parallel
Strand 6	F	267	269	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	50	51	first strand
Strand 2	J	128	129	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	218	222	first strand
Strand 2	J	203	207	anti-parallel
Strand 3	J	190	200	anti-parallel
Strand 4	J	176	185	anti-parallel
Strand 5	J	242	248	anti-parallel
Strand 6	J	267	270	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6J4Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
6J4Q