Analysis of interatomic Contacts of Structural Units in PDB entry:
6J56


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J56 entry

There are 4 chains in PDB entry 6J56 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 1158SER 1282
C
 GLY 437SER 463
B
 ARG 1166SER 1282
D
 GLY 437SER 463
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6J56. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1158 1164Right-handed alpha
Helix 2
AA2
A
1222 1226Right-handed 310
Helix 3
AA3
A
1230 1235Right-handed alpha
Helix 4
AA4
A
1236 1239Right-handed 310
Helix 5
AA5
A
1245 1256Right-handed alpha
Helix 6
AA6
A
1257 1268Right-handed alpha
Helix 7
AA7
A
1274 1281Right-handed alpha
Helix 8
AA8
C
438 454Right-handed alpha
Helix 9
AA9
B
1222 1226Right-handed 310
Helix 10
AB1
B
1230 1235Right-handed alpha
Helix 11
AB2
B
1236 1239Right-handed 310
Helix 12
AB3
B
1245 1256Right-handed alpha
Helix 13
AB4
B
1257 1268Right-handed alpha
Helix 14
AB5
B
1274 1280Right-handed alpha
Helix 15
AB6
D
438 453Right-handed alpha
Helix 16
AB7
D
454 456Right-handed 310
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There are 2 sheets in PDB entry 6J56. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1215 1218first strand
Strand 2
A
1201 1208anti-parallel
Strand 3
A
1192 1198anti-parallel
Strand 4
A
1168 1174anti-parallel
Strand 5
A
1243 1244anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1215 1218first strand
Strand 2
B
1201 1208anti-parallel
Strand 3
B
1192 1198anti-parallel
Strand 4
B
1168 1174anti-parallel
Strand 5
B
1243 1244anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il