Analysis of interatomic Contacts of Structural Units in PDB entry:
6J5B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J5B entry

There are 12 chains in PDB entry 6J5B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 226TYR 282
B
 G 1 A 20
C
 GLY 224TYR 282
D
 ALA 226TYR 282
E
 G 1 A 20
F
 LYS 225TYR 282
G
 T 1 C 20
H
 LYS 225TYR 282
I
 G 1 A 20
J
 ALA 226ARG 283
K
 T 1 C 20
U
 T 1 C 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6J5B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
231 245Right-handed alpha
Helix 2
AA2
A
252 261Right-handed alpha
Helix 3
AA3
A
266 280Right-handed alpha
Helix 4
AA4
C
231 245Right-handed alpha
Helix 5
AA5
C
252 261Right-handed alpha
Helix 6
AA6
C
266 280Right-handed alpha
Helix 7
AA7
D
231 245Right-handed alpha
Helix 8
AA8
D
252 261Right-handed alpha
Helix 9
AA9
D
266 280Right-handed alpha
Helix 10
AB1
F
231 245Right-handed alpha
Helix 11
AB2
F
252 261Right-handed alpha
Helix 12
AB3
F
266 280Right-handed alpha
Helix 13
AB4
H
231 245Right-handed alpha
Helix 14
AB5
H
252 261Right-handed alpha
Helix 15
AB6
H
266 280Right-handed alpha
Helix 16
AB7
J
231 245Right-handed alpha
Helix 17
AB8
J
252 261Right-handed alpha
Helix 18
AB9
J
266 280Right-handed alpha
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There are no sheets in PDB entry 6J5B
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il