Analysis of interatomic Contacts of Structural Units in PDB entry:
6J5U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J5U entry

There are 3 chains in PDB entry 6J5U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 847
C
 MET 172GLU 367
B
 ASP 17LEU 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 49 helices in PDB entry 6J5U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 17Right-handed alpha
Helix 2
AA2
A
18 20Right-handed 310
Helix 3
AA3
A
31 42Right-handed alpha
Helix 4
AA4
A
44 52Right-handed alpha
Helix 5
AA5
A
61 81Right-handed alpha
Helix 6
AA6
A
86 88Right-handed 310
Helix 7
AA7
A
89 98Right-handed alpha
Helix 8
AA8
A
100 104Right-handed 310
Helix 9
AA9
A
319 332Right-handed alpha
Helix 10
AB1
A
341 344Right-handed 310
Helix 11
AB2
A
345 351Right-handed alpha
Helix 12
AB3
A
358 369Right-handed alpha
Helix 13
AB4
A
375 388Right-handed alpha
Helix 14
AB5
A
389 391Right-handed 310
Helix 15
AB6
A
395 400Right-handed alpha
Helix 16
AB7
A
405 410Right-handed alpha
Helix 17
AB8
A
412 420Right-handed alpha
Helix 18
AB9
A
421 425Right-handed 310
Helix 19
AC1
A
433 444Right-handed alpha
Helix 20
AC2
A
454 468Right-handed alpha
Helix 21
AC3
A
488 501Right-handed alpha
Helix 22
AC4
A
548 556Right-handed alpha
Helix 23
AC5
A
581 585Right-handed 310
Helix 24
AC6
A
627 632Right-handed 310
Helix 25
AC7
A
653 657Right-handed 310
Helix 26
AC8
A
676 681Right-handed alpha
Helix 27
AC9
A
701 706Right-handed 310
Helix 28
AD1
A
726 731Right-handed alpha
Helix 29
AD2
A
780 784Right-handed 310
Helix 30
AD3
A
807 815Right-handed alpha
Helix 31
AD4
C
193 210Right-handed alpha
Helix 32
AD5
C
274 292Right-handed alpha
Helix 33
AD6
C
306 312Right-handed alpha
Helix 34
AD7
C
332 336Right-handed 310
Helix 35
AD8
C
337 349Right-handed alpha
Helix 36
AD9
C
361 367Right-handed alpha
Helix 37
AE1
B
18 39Right-handed alpha
Helix 38
AE2
B
49 58Right-handed alpha
Helix 39
AE3
B
90 94Right-handed 310
Helix 40
AE4
B
97 115Right-handed alpha
Helix 41
AE5
B
161 182Right-handed alpha
Helix 42
AE6
B
236 243Right-handed alpha
Helix 43
AE7
B
248 264Right-handed alpha
Helix 44
AE8
B
278 291Right-handed alpha
Helix 45
AE9
B
297 301Right-handed 310
Helix 46
AF1
B
308 322Right-handed alpha
Helix 47
AF2
B
326 330Right-handed 310
Helix 48
AF3
B
332 343Right-handed alpha
Helix 49
AF4
B
344 347Right-handed 310
Back to top of page

There are 7 sheets in PDB entry 6J5U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 432first strand
Strand 2
A
484 486anti-parallel
Strand 3
A
472 473anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
515 518first strand
Strand 2
A
535 538parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
545 546first strand
Strand 2
A
569 570parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
590 592first strand
Strand 2
A
614 616parallel
Strand 3
A
638 640parallel
Strand 4
A
662 664parallel
Strand 5
A
688 691parallel
Strand 6
A
715 718parallel
Strand 7
A
743 746parallel
Strand 8
A
768 771parallel
Strand 9
A
795 798parallel
Strand 10
A
820 822parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 67first strand
Strand 2
B
74 79anti-parallel
Strand 3
B
82 87anti-parallel
Strand 4
B
134 136anti-parallel
Strand 5
B
125 127anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 189first strand
Strand 2
B
213 216anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 223first strand
Strand 2
B
245 246anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il