Analysis of interatomic Contacts of Structural Units in PDB entry:
6J5V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J5V entry

There are 3 chains in PDB entry 6J5V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 847
C
 MET 172GLU 367
B
 ASP 17LEU 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 53 helices in PDB entry 6J5V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 17Right-handed alpha
Helix 2
AA2
A
18 20Right-handed 310
Helix 3
AA3
A
26 31Right-handed alpha
Helix 4
AA4
A
31 42Right-handed alpha
Helix 5
AA5
A
44 53Right-handed alpha
Helix 6
AA6
A
55 60Right-handed alpha
Helix 7
AA7
A
61 79Right-handed alpha
Helix 8
AA8
A
89 105Right-handed alpha
Helix 9
AA9
A
106 108Right-handed 310
Helix 10
AB1
A
166 176Right-handed alpha
Helix 11
AB2
A
194 198Right-handed 310
Helix 12
AB3
A
199 204Right-handed alpha
Helix 13
AB4
A
206 210Right-handed 310
Helix 14
AB5
A
246 254Right-handed alpha
Helix 15
AB6
A
277 282Right-handed alpha
Helix 16
AB7
A
323 332Right-handed alpha
Helix 17
AB8
A
343 355Right-handed alpha
Helix 18
AB9
A
358 369Right-handed alpha
Helix 19
AC1
A
375 390Right-handed alpha
Helix 20
AC2
A
397 410Right-handed alpha
Helix 21
AC3
A
418 422Right-handed 310
Helix 22
AC4
A
433 444Right-handed alpha
Helix 23
AC5
A
454 468Right-handed alpha
Helix 24
AC6
A
488 501Right-handed alpha
Helix 25
AC7
A
549 557Right-handed alpha
Helix 26
AC8
A
574 579Right-handed alpha
Helix 27
AC9
A
627 633Right-handed 310
Helix 28
AD1
A
653 657Right-handed 310
Helix 29
AD2
A
677 683Right-handed 310
Helix 30
AD3
A
700 704Right-handed 310
Helix 31
AD4
A
726 733Right-handed alpha
Helix 32
AD5
A
780 784Right-handed 310
Helix 33
AD6
A
807 815Right-handed alpha
Helix 34
AD7
C
193 210Right-handed alpha
Helix 35
AD8
C
221 225Right-handed 310
Helix 36
AD9
C
264 270Right-handed alpha
Helix 37
AE1
C
274 292Right-handed alpha
Helix 38
AE2
C
306 312Right-handed alpha
Helix 39
AE3
C
337 349Right-handed alpha
Helix 40
AE4
B
18 39Right-handed alpha
Helix 41
AE5
B
49 58Right-handed alpha
Helix 42
AE6
B
90 95Right-handed alpha
Helix 43
AE7
B
97 114Right-handed alpha
Helix 44
AE8
B
115 117Right-handed 310
Helix 45
AE9
B
162 182Right-handed alpha
Helix 46
AF1
B
236 243Right-handed alpha
Helix 47
AF2
B
247 254Right-handed alpha
Helix 48
AF3
B
254 264Right-handed alpha
Helix 49
AF4
B
278 290Right-handed alpha
Helix 50
AF5
B
297 301Right-handed 310
Helix 51
AF6
B
307 322Right-handed alpha
Helix 52
AF7
B
326 330Right-handed 310
Helix 53
AF8
B
332 343Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6J5V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 186first strand
Strand 2
A
291 295parallel
Strand 3
A
263 267parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 432first strand
Strand 2
A
484 486anti-parallel
Strand 3
A
472 473anti-parallel
Back to list of sheets
Back to top of page

There are 13 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
515 517first strand
Strand 2
A
534 537parallel
Strand 3
A
563 565parallel
Strand 4
A
590 592parallel
Strand 5
A
614 616parallel
Strand 6
A
638 640parallel
Strand 7
A
662 664parallel
Strand 8
A
688 691parallel
Strand 9
A
715 718parallel
Strand 10
A
743 746parallel
Strand 11
A
768 771parallel
Strand 12
A
795 798parallel
Strand 13
A
820 822parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 47first strand
Strand 2
B
123 126parallel
Strand 3
B
135 137anti-parallel
Strand 4
B
82 87anti-parallel
Strand 5
B
73 79anti-parallel
Strand 6
B
65 68anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 189first strand
Strand 2
B
213 215anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 199first strand
Strand 2
B
205 206anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il