Analysis of interatomic Contacts of Structural Units in PDB entry:
6J5W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J5W entry

There are 2 chains in PDB entry 6J5W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLU 15LEU 347
A
 MET 1THR 847
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 6J5W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
16 39Right-handed alpha
Helix 2
AA2
B
49 57Right-handed alpha
Helix 3
AA3
B
97 114Right-handed alpha
Helix 4
AA4
B
115 117Right-handed 310
Helix 5
AA5
B
161 182Right-handed alpha
Helix 6
AA6
B
193 195Right-handed 310
Helix 7
AA7
B
247 264Right-handed alpha
Helix 8
AA8
B
278 289Right-handed alpha
Helix 9
AA9
B
297 301Right-handed 310
Helix 10
AB1
B
309 322Right-handed alpha
Helix 11
AB2
B
332 345Right-handed alpha
Helix 12
AB3
A
2 18Right-handed alpha
Helix 13
AB4
A
25 42Right-handed alpha
Helix 14
AB5
A
45 51Right-handed alpha
Helix 15
AB6
A
55 81Right-handed alpha
Helix 16
AB7
A
89 99Right-handed alpha
Helix 17
AB8
A
104 112Right-handed alpha
Helix 18
AB9
A
163 175Right-handed alpha
Helix 19
AC1
A
176 180Right-handed 310
Helix 20
AC2
A
194 200Right-handed alpha
Helix 21
AC3
A
205 210Right-handed alpha
Helix 22
AC4
A
227 235Right-handed alpha
Helix 23
AC5
A
245 257Right-handed alpha
Helix 24
AC6
A
275 282Right-handed alpha
Helix 25
AC7
A
298 302Right-handed 310
Helix 26
AC8
A
308 310Right-handed 310
Helix 27
AC9
A
321 332Right-handed alpha
Helix 28
AD1
A
341 343Right-handed 310
Helix 29
AD2
A
344 353Right-handed alpha
Helix 30
AD3
A
358 371Right-handed alpha
Helix 31
AD4
A
375 390Right-handed alpha
Helix 32
AD5
A
396 410Right-handed alpha
Helix 33
AD6
A
412 421Right-handed alpha
Helix 34
AD7
A
422 425Right-handed 310
Helix 35
AD8
A
433 441Right-handed alpha
Helix 36
AD9
A
456 464Right-handed alpha
Helix 37
AE1
A
488 501Right-handed alpha
Helix 38
AE2
A
554 558Right-handed 310
Helix 39
AE3
A
574 579Right-handed alpha
Helix 40
AE4
A
580 582Right-handed 310
Helix 41
AE5
A
603 607Right-handed 310
Helix 42
AE6
A
627 632Right-handed 310
Helix 43
AE7
A
652 657Right-handed 310
Helix 44
AE8
A
676 683Right-handed 310
Helix 45
AE9
A
695 699Right-handed 310
Helix 46
AF1
A
700 704Right-handed 310
Helix 47
AF2
A
705 709Right-handed 310
Helix 48
AF3
A
728 733Right-handed alpha
Helix 49
AF4
A
780 785Right-handed alpha
Helix 50
AF5
A
808 815Right-handed alpha
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There are 7 sheets in PDB entry 6J5W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 79first strand
Strand 2
B
82 89anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 127first strand
Strand 2
B
134 136anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 199first strand
Strand 2
B
205 207anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 219first strand
Strand 2
A
263 267parallel
Strand 3
A
291 296parallel
Strand 4
A
183 188parallel
Strand 5
A
312 313parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 432first strand
Strand 2
A
484 486anti-parallel
Strand 3
A
472 473anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
515 517first strand
Strand 2
A
534 537parallel
Strand 3
A
563 565parallel
Strand 4
A
590 592parallel
Strand 5
A
614 616parallel
Strand 6
A
638 640parallel
Strand 7
A
662 664parallel
Strand 8
A
688 689parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
743 746first strand
Strand 2
A
768 771parallel
Strand 3
A
795 798parallel
Strand 4
A
820 823parallel
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