Analysis of interatomic Contacts of Structural Units in PDB entry:
6J61

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6J61 entry

There are 4 chains in PDB entry 6J61 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 5	GLY 265
B	LEU 5	PHE 264
C	LEU 5	GLY 265
D	LEU 5	GLY 265

There are 52 helices in PDB entry 6J61. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	33	Right-handed alpha
Helix 2	AA2	A	41	55	Right-handed alpha
Helix 3	AA3	A	58	63	Right-handed 310
Helix 4	AA4	A	74	81	Right-handed alpha
Helix 5	AA5	A	132	149	Right-handed alpha
Helix 6	AA6	A	152	157	Right-handed alpha
Helix 7	AA7	A	158	160	Right-handed 310
Helix 8	AA8	A	174	185	Right-handed alpha
Helix 9	AA9	A	190	208	Right-handed alpha
Helix 10	AB1	A	208	219	Right-handed alpha
Helix 11	AB2	A	226	237	Right-handed alpha
Helix 12	AB3	A	238	249	Right-handed alpha
Helix 13	AB4	A	252	264	Right-handed alpha
Helix 14	AB5	B	23	33	Right-handed alpha
Helix 15	AB6	B	41	55	Right-handed alpha
Helix 16	AB7	B	58	63	Right-handed alpha
Helix 17	AB8	B	74	81	Right-handed alpha
Helix 18	AB9	B	132	149	Right-handed alpha
Helix 19	AC1	B	152	157	Right-handed alpha
Helix 20	AC2	B	158	160	Right-handed 310
Helix 21	AC3	B	174	186	Right-handed alpha
Helix 22	AC4	B	190	208	Right-handed alpha
Helix 23	AC5	B	208	219	Right-handed alpha
Helix 24	AC6	B	226	237	Right-handed alpha
Helix 25	AC7	B	238	248	Right-handed alpha
Helix 26	AC8	B	253	262	Right-handed alpha
Helix 27	AC9	C	23	32	Right-handed alpha
Helix 28	AD1	C	41	55	Right-handed alpha
Helix 29	AD2	C	59	63	Right-handed 310
Helix 30	AD3	C	74	81	Right-handed alpha
Helix 31	AD4	C	132	149	Right-handed alpha
Helix 32	AD5	C	152	157	Right-handed alpha
Helix 33	AD6	C	158	160	Right-handed 310
Helix 34	AD7	C	174	185	Right-handed alpha
Helix 35	AD8	C	190	208	Right-handed alpha
Helix 36	AD9	C	208	219	Right-handed alpha
Helix 37	AE1	C	226	234	Right-handed alpha
Helix 38	AE2	C	238	248	Right-handed alpha
Helix 39	AE3	C	252	264	Right-handed alpha
Helix 40	AE4	D	23	33	Right-handed alpha
Helix 41	AE5	D	41	55	Right-handed alpha
Helix 42	AE6	D	59	63	Right-handed 310
Helix 43	AE7	D	74	81	Right-handed alpha
Helix 44	AE8	D	132	149	Right-handed alpha
Helix 45	AE9	D	152	157	Right-handed alpha
Helix 46	AF1	D	158	160	Right-handed 310
Helix 47	AF2	D	174	186	Right-handed alpha
Helix 48	AF3	D	190	208	Right-handed alpha
Helix 49	AF4	D	208	219	Right-handed alpha
Helix 50	AF5	D	226	237	Right-handed alpha
Helix 51	AF6	D	238	249	Right-handed alpha
Helix 52	AF7	D	253	262	Right-handed alpha

There are 6 sheets in PDB entry 6J61. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	9	first strand
Strand 2	A	13	21	anti-parallel
Strand 3	A	65	73	anti-parallel
Strand 4	A	165	173	anti-parallel
Strand 5	A	87	90	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	225	first strand
Strand 2	D	223	225	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	9	first strand
Strand 2	B	13	21	anti-parallel
Strand 3	B	65	73	anti-parallel
Strand 4	B	165	173	anti-parallel
Strand 5	B	87	90	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	225	first strand
Strand 2	C	223	225	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	9	first strand
Strand 2	C	13	21	anti-parallel
Strand 3	C	65	73	anti-parallel
Strand 4	C	165	173	anti-parallel
Strand 5	C	87	90	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	9	first strand
Strand 2	D	13	21	anti-parallel
Strand 3	D	65	73	anti-parallel
Strand 4	D	165	173	anti-parallel
Strand 5	D	87	90	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6J61

Analysis of interatomic Contacts of Structural Units in PDB entry:
6J61