Analysis of interatomic Contacts of Structural Units in PDB entry:
6J66


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J66 entry

There are 4 chains in PDB entry 6J66 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 46LEU 95
A
 THR 97TYR 520
B
 LYS 46LEU 95
B
 THR 97THR 521
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 6J66. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 67Right-handed 310
Helix 2
AA2
A
73 82Right-handed alpha
Helix 3
AA3
A
95 106Right-handed alpha
Helix 4
AA4
A
108 113Right-handed alpha
Helix 5
AA5
A
127 132Right-handed 310
Helix 6
AA6
A
141 149Right-handed alpha
Helix 7
AA7
A
186 190Right-handed 310
Helix 8
AA8
A
226 241Right-handed alpha
Helix 9
AA9
A
270 275Right-handed alpha
Helix 10
AB1
A
276 278Right-handed 310
Helix 11
AB2
A
281 286Right-handed alpha
Helix 12
AB3
A
302 304Right-handed 310
Helix 13
AB4
A
305 330Right-handed alpha
Helix 14
AB5
A
332 334Right-handed 310
Helix 15
AB6
A
349 353Right-handed 310
Helix 16
AB7
A
360 365Right-handed alpha
Helix 17
AB8
A
386 388Right-handed 310
Helix 18
AB9
A
389 398Right-handed alpha
Helix 19
AC1
A
400 404Right-handed 310
Helix 20
AC2
A
413 418Right-handed alpha
Helix 21
AC3
A
484 495Right-handed alpha
Helix 22
AC4
A
495 504Right-handed alpha
Helix 23
AC5
A
513 518Right-handed 310
Helix 24
AC6
B
59 67Right-handed 310
Helix 25
AC7
B
73 82Right-handed alpha
Helix 26
AC8
B
95 106Right-handed alpha
Helix 27
AC9
B
108 113Right-handed alpha
Helix 28
AD1
B
127 132Right-handed 310
Helix 29
AD2
B
141 149Right-handed alpha
Helix 30
AD3
B
186 190Right-handed 310
Helix 31
AD4
B
226 241Right-handed alpha
Helix 32
AD5
B
242 245Right-handed 310
Helix 33
AD6
B
270 276Right-handed alpha
Helix 34
AD7
B
281 286Right-handed alpha
Helix 35
AD8
B
302 304Right-handed 310
Helix 36
AD9
B
305 330Right-handed alpha
Helix 37
AE1
B
332 334Right-handed 310
Helix 38
AE2
B
349 353Right-handed 310
Helix 39
AE3
B
360 365Right-handed alpha
Helix 40
AE4
B
386 388Right-handed 310
Helix 41
AE5
B
389 398Right-handed alpha
Helix 42
AE6
B
400 404Right-handed 310
Helix 43
AE7
B
413 418Right-handed alpha
Helix 44
AE8
B
480 483Right-handed 310
Helix 45
AE9
B
484 495Right-handed alpha
Helix 46
AF1
B
495 504Right-handed alpha
Helix 47
AF2
B
513 521Right-handed 310
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There are 6 sheets in PDB entry 6J66. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 222first strand
Strand 2
A
209 212anti-parallel
Strand 3
A
195 199anti-parallel
Strand 4
A
152 158parallel
Strand 5
A
253 258parallel
Strand 6
A
49 54parallel
Strand 7
A
336 341parallel
Strand 8
A
368 371anti-parallel
Strand 9
A
84 86anti-parallel
Strand 10
A
379 381parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 121first strand
Strand 2
A
179 180anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
429 433first strand
Strand 2
A
442 447anti-parallel
Strand 3
A
451 457anti-parallel
Strand 4
A
464 469anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 222first strand
Strand 2
B
209 212anti-parallel
Strand 3
B
195 199anti-parallel
Strand 4
B
152 158parallel
Strand 5
B
253 258parallel
Strand 6
B
49 54parallel
Strand 7
B
336 341parallel
Strand 8
B
368 371anti-parallel
Strand 9
B
84 86anti-parallel
Strand 10
B
379 381parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 121first strand
Strand 2
B
179 180anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
429 433first strand
Strand 2
B
442 447anti-parallel
Strand 3
B
451 457anti-parallel
Strand 4
B
464 469anti-parallel
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