Analysis of interatomic Contacts of Structural Units in PDB entry:
6J6A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6J6A entry

There are 2 chains in PDB entry 6J6A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA -1	GLY 440
B	ALA -1	GLY 440

There are 22 helices in PDB entry 6J6A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	-1	9	Right-handed alpha
Helix 2	AA2	A	64	82	Right-handed alpha
Helix 3	AA3	A	104	109	Right-handed 310
Helix 4	AA4	A	111	130	Right-handed alpha
Helix 5	AA5	A	194	210	Right-handed alpha
Helix 6	AA6	A	225	237	Right-handed alpha
Helix 7	AA7	A	238	241	Right-handed 310
Helix 8	AA8	A	242	248	Right-handed alpha
Helix 9	AA9	A	307	315	Right-handed alpha
Helix 10	AB1	A	346	353	Right-handed alpha
Helix 11	AB2	A	403	409	Right-handed alpha
Helix 12	AB3	B	0	9	Right-handed alpha
Helix 13	AB4	B	64	82	Right-handed alpha
Helix 14	AB5	B	104	108	Right-handed 310
Helix 15	AB6	B	111	130	Right-handed alpha
Helix 16	AB7	B	194	210	Right-handed alpha
Helix 17	AB8	B	225	237	Right-handed alpha
Helix 18	AB9	B	238	241	Right-handed 310
Helix 19	AC1	B	242	248	Right-handed alpha
Helix 20	AC2	B	307	315	Right-handed alpha
Helix 21	AC3	B	346	353	Right-handed alpha
Helix 22	AC4	B	403	409	Right-handed alpha

There are 11 sheets in PDB entry 6J6A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	188	first strand
Strand 2	A	156	171	anti-parallel
Strand 3	A	134	151	anti-parallel
Strand 4	A	14	30	anti-parallel
Strand 5	A	33	51	anti-parallel
Strand 6	A	54	60	anti-parallel
Strand 7	B	33	51	parallel
Strand 8	B	14	30	anti-parallel
Strand 9	B	133	151	anti-parallel
Strand 10	B	156	172	anti-parallel
Strand 11	B	182	188	anti-parallel

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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	188	first strand
Strand 2	A	156	171	anti-parallel
Strand 3	A	134	151	anti-parallel
Strand 4	A	14	30	anti-parallel
Strand 5	A	33	51	anti-parallel
Strand 6	B	54	60	parallel
Strand 7	B	33	51	anti-parallel
Strand 8	B	14	30	anti-parallel
Strand 9	B	133	151	anti-parallel
Strand 10	B	156	172	anti-parallel
Strand 11	B	182	188	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	174	first strand
Strand 2	A	177	178	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	370	first strand
Strand 2	A	375	387	anti-parallel
Strand 3	A	356	360	anti-parallel
Strand 4	A	218	224	parallel
Strand 5	A	431	439	anti-parallel
Strand 6	A	410	413	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	370	first strand
Strand 2	A	375	387	anti-parallel
Strand 3	A	390	402	anti-parallel
Strand 4	A	431	439	anti-parallel
Strand 5	A	410	413	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	301	first strand
Strand 2	A	293	297	anti-parallel
Strand 3	A	268	270	anti-parallel
Strand 4	A	338	340	anti-parallel
Strand 5	A	426	428	parallel
Strand 6	A	418	420	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	324	first strand
Strand 2	A	331	333	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	370	first strand
Strand 2	B	375	387	anti-parallel
Strand 3	B	356	360	anti-parallel
Strand 4	B	218	224	parallel
Strand 5	B	431	439	anti-parallel
Strand 6	B	410	413	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	370	first strand
Strand 2	B	375	387	anti-parallel
Strand 3	B	390	402	anti-parallel
Strand 4	B	431	439	anti-parallel
Strand 5	B	410	413	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	301	first strand
Strand 2	B	293	297	anti-parallel
Strand 3	B	268	270	anti-parallel
Strand 4	B	338	340	anti-parallel
Strand 5	B	426	428	parallel
Strand 6	B	418	420	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	324	first strand
Strand 2	B	331	333	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6J6A

Analysis of interatomic Contacts of Structural Units in PDB entry:
6J6A