Analysis of interatomic Contacts of Structural Units in PDB entry:
6J6F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J6F entry

There are 2 chains in PDB entry 6J6F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 30GLY 341
B
 VAL 33THR 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6J6F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 57Right-handed alpha
Helix 2
AA2
A
62 84Right-handed alpha
Helix 3
AA3
A
90 97Right-handed alpha
Helix 4
AA4
A
97 118Right-handed alpha
Helix 5
AA5
A
118 126Right-handed alpha
Helix 6
AA6
A
127 153Right-handed alpha
Helix 7
AA7
A
157 179Right-handed alpha
Helix 8
AA8
A
192 217Right-handed alpha
Helix 9
AA9
A
222 243Right-handed alpha
Helix 10
AB1
A
250 259Right-handed alpha
Helix 11
AB2
A
259 278Right-handed alpha
Helix 12
AB3
A
279 286Right-handed alpha
Helix 13
AB4
A
287 313Right-handed alpha
Helix 14
AB5
A
317 340Right-handed alpha
Helix 15
AB6
B
34 57Right-handed alpha
Helix 16
AB7
B
62 84Right-handed alpha
Helix 17
AB8
B
90 97Right-handed alpha
Helix 18
AB9
B
98 118Right-handed alpha
Helix 19
AC1
B
118 126Right-handed alpha
Helix 20
AC2
B
127 153Right-handed alpha
Helix 21
AC3
B
157 180Right-handed alpha
Helix 22
AC4
B
192 217Right-handed alpha
Helix 23
AC5
B
222 243Right-handed alpha
Helix 24
AC6
B
250 259Right-handed alpha
Helix 25
AC7
B
259 278Right-handed alpha
Helix 26
AC8
B
279 286Right-handed alpha
Helix 27
AC9
B
287 313Right-handed alpha
Helix 28
AD1
B
317 340Right-handed alpha
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There are no sheets in PDB entry 6J6F
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il