Analysis of interatomic Contacts of Structural Units in PDB entry:
6J6I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6J6I entry

There are 7 chains in PDB entry 6J6I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 135	GLU 367
B	ASP 17	LEU 347
C	THR 23	THR 847
F	THR 23	THR 847
G	THR 23	THR 847
L	THR 23	THR 847
O	THR 23	THR 847

There are188 helices in PDB entry 6J6I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	137	145	Right-handed alpha
Helix 2	AA2	A	177	182	Right-handed alpha
Helix 3	AA3	A	193	209	Right-handed alpha
Helix 4	AA4	A	264	270	Right-handed alpha
Helix 5	AA5	A	274	292	Right-handed alpha
Helix 6	AA6	A	336	349	Right-handed alpha
Helix 7	AA7	A	358	365	Right-handed alpha
Helix 8	AA8	B	18	39	Right-handed alpha
Helix 9	AA9	B	49	57	Right-handed alpha
Helix 10	AB1	B	90	96	Right-handed alpha
Helix 11	AB2	B	101	114	Right-handed alpha
Helix 12	AB3	B	115	117	Right-handed 310
Helix 13	AB4	B	161	182	Right-handed alpha
Helix 14	AB5	B	236	243	Right-handed alpha
Helix 15	AB6	B	247	264	Right-handed alpha
Helix 16	AB7	B	278	289	Right-handed alpha
Helix 17	AB8	B	307	322	Right-handed alpha
Helix 18	AB9	B	332	345	Right-handed alpha
Helix 19	AC1	C	28	45	Right-handed alpha
Helix 20	AC2	C	46	51	Right-handed 310
Helix 21	AC3	C	55	76	Right-handed alpha
Helix 22	AC4	C	77	80	Right-handed 310
Helix 23	AC5	C	109	136	Right-handed alpha
Helix 24	AC6	C	163	175	Right-handed alpha
Helix 25	AC7	C	176	180	Right-handed 310
Helix 26	AC8	C	194	204	Right-handed alpha
Helix 27	AC9	C	205	212	Right-handed alpha
Helix 28	AD1	C	225	237	Right-handed alpha
Helix 29	AD2	C	245	256	Right-handed alpha
Helix 30	AD3	C	273	275	Right-handed 310
Helix 31	AD4	C	276	281	Right-handed alpha
Helix 32	AD5	C	299	305	Right-handed alpha
Helix 33	AD6	C	319	332	Right-handed alpha
Helix 34	AD7	C	341	343	Right-handed 310
Helix 35	AD8	C	344	356	Right-handed alpha
Helix 36	AD9	C	358	370	Right-handed alpha
Helix 37	AE1	C	375	385	Right-handed alpha
Helix 38	AE2	C	386	391	Right-handed alpha
Helix 39	AE3	C	392	397	Right-handed alpha
Helix 40	AE4	C	399	409	Right-handed alpha
Helix 41	AE5	C	412	421	Right-handed alpha
Helix 42	AE6	C	422	424	Right-handed 310
Helix 43	AE7	C	433	443	Right-handed alpha
Helix 44	AE8	C	454	467	Right-handed alpha
Helix 45	AE9	C	488	500	Right-handed alpha
Helix 46	AF1	C	548	556	Right-handed alpha
Helix 47	AF2	C	574	579	Right-handed alpha
Helix 48	AF3	C	678	683	Right-handed 310
Helix 49	AF4	C	695	699	Right-handed 310
Helix 50	AF5	C	725	733	Right-handed alpha
Helix 51	AF6	C	780	784	Right-handed 310
Helix 52	AF7	C	808	815	Right-handed alpha
Helix 53	AF8	F	28	45	Right-handed alpha
Helix 54	AF9	F	46	51	Right-handed 310
Helix 55	AG1	F	55	76	Right-handed alpha
Helix 56	AG2	F	77	80	Right-handed 310
Helix 57	AG3	F	109	136	Right-handed alpha
Helix 58	AG4	F	163	175	Right-handed alpha
Helix 59	AG5	F	176	180	Right-handed 310
Helix 60	AG6	F	194	204	Right-handed alpha
Helix 61	AG7	F	205	212	Right-handed alpha
Helix 62	AG8	F	225	237	Right-handed alpha
Helix 63	AG9	F	245	256	Right-handed alpha
Helix 64	AH1	F	273	275	Right-handed 310
Helix 65	AH2	F	276	281	Right-handed alpha
Helix 66	AH3	F	299	305	Right-handed alpha
Helix 67	AH4	F	319	332	Right-handed alpha
Helix 68	AH5	F	341	343	Right-handed 310
Helix 69	AH6	F	344	356	Right-handed alpha
Helix 70	AH7	F	358	370	Right-handed alpha
Helix 71	AH8	F	375	385	Right-handed alpha
Helix 72	AH9	F	386	391	Right-handed alpha
Helix 73	AI1	F	392	397	Right-handed alpha
Helix 74	AI2	F	399	409	Right-handed alpha
Helix 75	AI3	F	412	421	Right-handed alpha
Helix 76	AI4	F	422	424	Right-handed 310
Helix 77	AI5	F	433	443	Right-handed alpha
Helix 78	AI6	F	454	467	Right-handed alpha
Helix 79	AI7	F	488	500	Right-handed alpha
Helix 80	AI8	F	548	556	Right-handed alpha
Helix 81	AI9	F	574	579	Right-handed alpha
Helix 82	AJ1	F	678	683	Right-handed 310
Helix 83	AJ2	F	695	699	Right-handed 310
Helix 84	AJ3	F	725	733	Right-handed alpha
Helix 85	AJ4	F	780	784	Right-handed 310
Helix 86	AJ5	F	808	815	Right-handed alpha
Helix 87	AJ6	G	28	45	Right-handed alpha
Helix 88	AJ7	G	46	51	Right-handed 310
Helix 89	AJ8	G	55	76	Right-handed alpha
Helix 90	AJ9	G	77	80	Right-handed 310
Helix 91	AK1	G	109	136	Right-handed alpha
Helix 92	AK2	G	163	175	Right-handed alpha
Helix 93	AK3	G	176	180	Right-handed 310
Helix 94	AK4	G	194	204	Right-handed alpha
Helix 95	AK5	G	205	212	Right-handed alpha
Helix 96	AK6	G	225	237	Right-handed alpha
Helix 97	AK7	G	245	256	Right-handed alpha
Helix 98	AK8	G	273	275	Right-handed 310
Helix 99	AK9	G	276	281	Right-handed alpha
Helix 100	AL1	G	299	305	Right-handed alpha
Helix 101	AL2	G	319	332	Right-handed alpha
Helix 102	AL3	G	341	343	Right-handed 310
Helix 103	AL4	G	344	356	Right-handed alpha
Helix 104	AL5	G	358	370	Right-handed alpha
Helix 105	AL6	G	375	385	Right-handed alpha
Helix 106	AL7	G	386	391	Right-handed alpha
Helix 107	AL8	G	392	397	Right-handed alpha
Helix 108	AL9	G	399	409	Right-handed alpha
Helix 109	AM1	G	412	421	Right-handed alpha
Helix 110	AM2	G	422	424	Right-handed 310
Helix 111	AM3	G	433	443	Right-handed alpha
Helix 112	AM4	G	454	467	Right-handed alpha
Helix 113	AM5	G	488	500	Right-handed alpha
Helix 114	AM6	G	548	556	Right-handed alpha
Helix 115	AM7	G	574	579	Right-handed alpha
Helix 116	AM8	G	678	683	Right-handed 310
Helix 117	AM9	G	695	699	Right-handed 310
Helix 118	AN1	G	725	733	Right-handed alpha
Helix 119	AN2	G	780	784	Right-handed 310
Helix 120	AN3	G	808	815	Right-handed alpha
Helix 121	AN4	L	28	45	Right-handed alpha
Helix 122	AN5	L	46	51	Right-handed 310
Helix 123	AN6	L	55	76	Right-handed alpha
Helix 124	AN7	L	77	80	Right-handed 310
Helix 125	AN8	L	109	136	Right-handed alpha
Helix 126	AN9	L	163	175	Right-handed alpha
Helix 127	AO1	L	176	180	Right-handed 310
Helix 128	AO2	L	194	204	Right-handed alpha
Helix 129	AO3	L	205	212	Right-handed alpha
Helix 130	AO4	L	225	237	Right-handed alpha
Helix 131	AO5	L	245	256	Right-handed alpha
Helix 132	AO6	L	273	275	Right-handed 310
Helix 133	AO7	L	276	281	Right-handed alpha
Helix 134	AO8	L	299	305	Right-handed alpha
Helix 135	AO9	L	319	332	Right-handed alpha
Helix 136	AP1	L	341	343	Right-handed 310
Helix 137	AP2	L	344	356	Right-handed alpha
Helix 138	AP3	L	358	370	Right-handed alpha
Helix 139	AP4	L	375	385	Right-handed alpha
Helix 140	AP5	L	386	391	Right-handed alpha
Helix 141	AP6	L	392	397	Right-handed alpha
Helix 142	AP7	L	399	409	Right-handed alpha
Helix 143	AP8	L	412	421	Right-handed alpha
Helix 144	AP9	L	422	424	Right-handed 310
Helix 145	AQ1	L	433	443	Right-handed alpha
Helix 146	AQ2	L	454	467	Right-handed alpha
Helix 147	AQ3	L	488	500	Right-handed alpha
Helix 148	AQ4	L	548	556	Right-handed alpha
Helix 149	AQ5	L	574	579	Right-handed alpha
Helix 150	AQ6	L	678	683	Right-handed 310
Helix 151	AQ7	L	695	699	Right-handed 310
Helix 152	AQ8	L	725	733	Right-handed alpha
Helix 153	AQ9	L	780	784	Right-handed 310
Helix 154	AR1	L	808	815	Right-handed alpha
Helix 155	AR2	O	28	45	Right-handed alpha
Helix 156	AR3	O	46	51	Right-handed 310
Helix 157	AR4	O	55	76	Right-handed alpha
Helix 158	AR5	O	77	80	Right-handed 310
Helix 159	AR6	O	109	136	Right-handed alpha
Helix 160	AR7	O	163	175	Right-handed alpha
Helix 161	AR8	O	176	180	Right-handed 310
Helix 162	AR9	O	194	204	Right-handed alpha
Helix 163	AS1	O	205	212	Right-handed alpha
Helix 164	AS2	O	225	237	Right-handed alpha
Helix 165	AS3	O	245	256	Right-handed alpha
Helix 166	AS4	O	273	275	Right-handed 310
Helix 167	AS5	O	276	281	Right-handed alpha
Helix 168	AS6	O	299	305	Right-handed alpha
Helix 169	AS7	O	319	332	Right-handed alpha
Helix 170	AS8	O	341	343	Right-handed 310
Helix 171	AS9	O	344	356	Right-handed alpha
Helix 172	AT1	O	358	370	Right-handed alpha
Helix 173	AT2	O	375	385	Right-handed alpha
Helix 174	AT3	O	386	391	Right-handed alpha
Helix 175	AT4	O	392	397	Right-handed alpha
Helix 176	AT5	O	399	409	Right-handed alpha
Helix 177	AT6	O	412	421	Right-handed alpha
Helix 178	AT7	O	422	424	Right-handed 310
Helix 179	AT8	O	433	443	Right-handed alpha
Helix 180	AT9	O	454	467	Right-handed alpha
Helix 181	AU1	O	488	500	Right-handed alpha
Helix 182	AU2	O	548	556	Right-handed alpha
Helix 183	AU3	O	574	579	Right-handed alpha
Helix 184	AU4	O	678	683	Right-handed 310
Helix 185	AU5	O	695	699	Right-handed 310
Helix 186	AU6	O	725	733	Right-handed alpha
Helix 187	AU7	O	780	784	Right-handed 310
Helix 188	AU8	O	808	815	Right-handed alpha

There are 30 sheets in PDB entry 6J6I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	176	first strand
Strand 2	A	226	227	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	255	first strand
Strand 2	B	228	229	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	68	first strand
Strand 2	B	72	79	anti-parallel
Strand 3	B	82	89	anti-parallel
Strand 4	B	134	138	anti-parallel
Strand 5	B	123	127	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	144	first strand
Strand 2	B	198	199	anti-parallel
Strand 3	B	205	206	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	188	first strand
Strand 2	B	214	215	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	214	219	first strand
Strand 2	C	262	269	parallel
Strand 3	C	291	296	parallel
Strand 4	C	183	188	parallel
Strand 5	C	312	313	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	431	432	first strand
Strand 2	C	482	486	anti-parallel
Strand 3	C	472	476	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	514	517	first strand
Strand 2	C	534	537	parallel
Strand 3	C	563	565	parallel
Strand 4	C	590	592	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	545	546	first strand
Strand 2	C	569	570	parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	614	616	first strand
Strand 2	C	638	640	parallel
Strand 3	C	662	664	parallel
Strand 4	C	688	692	parallel
Strand 5	C	715	719	parallel
Strand 6	C	743	746	parallel
Strand 7	C	768	771	parallel
Strand 8	C	795	800	parallel
Strand 9	C	820	825	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	214	219	first strand
Strand 2	F	262	269	parallel
Strand 3	F	291	296	parallel
Strand 4	F	183	188	parallel
Strand 5	F	312	313	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	431	432	first strand
Strand 2	F	482	486	anti-parallel
Strand 3	F	472	476	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	514	517	first strand
Strand 2	F	534	537	parallel
Strand 3	F	563	565	parallel
Strand 4	F	590	592	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	545	546	first strand
Strand 2	F	569	570	parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	614	616	first strand
Strand 2	F	638	640	parallel
Strand 3	F	662	664	parallel
Strand 4	F	688	692	parallel
Strand 5	F	715	719	parallel
Strand 6	F	743	746	parallel
Strand 7	F	768	771	parallel
Strand 8	F	795	800	parallel
Strand 9	F	820	825	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	214	219	first strand
Strand 2	G	262	269	parallel
Strand 3	G	291	296	parallel
Strand 4	G	183	188	parallel
Strand 5	G	312	313	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	431	432	first strand
Strand 2	G	482	486	anti-parallel
Strand 3	G	472	476	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	514	517	first strand
Strand 2	G	534	537	parallel
Strand 3	G	563	565	parallel
Strand 4	G	590	592	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	545	546	first strand
Strand 2	G	569	570	parallel

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There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	614	616	first strand
Strand 2	G	638	640	parallel
Strand 3	G	662	664	parallel
Strand 4	G	688	692	parallel
Strand 5	G	715	719	parallel
Strand 6	G	743	746	parallel
Strand 7	G	768	771	parallel
Strand 8	G	795	800	parallel
Strand 9	G	820	825	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	214	219	first strand
Strand 2	L	262	269	parallel
Strand 3	L	291	296	parallel
Strand 4	L	183	188	parallel
Strand 5	L	312	313	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	431	432	first strand
Strand 2	L	482	486	anti-parallel
Strand 3	L	472	476	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	514	517	first strand
Strand 2	L	534	537	parallel
Strand 3	L	563	565	parallel
Strand 4	L	590	592	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	545	546	first strand
Strand 2	L	569	570	parallel

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There are 9 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	614	616	first strand
Strand 2	L	638	640	parallel
Strand 3	L	662	664	parallel
Strand 4	L	688	692	parallel
Strand 5	L	715	719	parallel
Strand 6	L	743	746	parallel
Strand 7	L	768	771	parallel
Strand 8	L	795	800	parallel
Strand 9	L	820	825	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	214	219	first strand
Strand 2	O	262	269	parallel
Strand 3	O	291	296	parallel
Strand 4	O	183	188	parallel
Strand 5	O	312	313	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	431	432	first strand
Strand 2	O	482	486	anti-parallel
Strand 3	O	472	476	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	514	517	first strand
Strand 2	O	534	537	parallel
Strand 3	O	563	565	parallel
Strand 4	O	590	592	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	545	546	first strand
Strand 2	O	569	570	parallel

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There are 9 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	614	616	first strand
Strand 2	O	638	640	parallel
Strand 3	O	662	664	parallel
Strand 4	O	688	692	parallel
Strand 5	O	715	719	parallel
Strand 6	O	743	746	parallel
Strand 7	O	768	771	parallel
Strand 8	O	795	800	parallel
Strand 9	O	820	825	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6J6I

Analysis of interatomic Contacts of Structural Units in PDB entry:
6J6I