Analysis of interatomic Contacts of Structural Units in PDB entry:
6J6T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J6T entry

There are 4 chains in PDB entry 6J6T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 148LEU 505
B
 ALA 146GLU 509
C
 THR 150LEU 505
D
 THR 147GLU 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 6J6T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
155 161Right-handed 310
Helix 2
AA2
A
175 188Right-handed alpha
Helix 3
AA3
A
204 209Right-handed alpha
Helix 4
AA4
A
213 223Right-handed alpha
Helix 5
AA5
A
224 226Right-handed 310
Helix 6
AA6
A
240 261Right-handed alpha
Helix 7
AA7
A
290 302Right-handed alpha
Helix 8
AA8
A
317 325Right-handed alpha
Helix 9
AA9
A
339 342Right-handed 310
Helix 10
AB1
A
355 359Right-handed 310
Helix 11
AB2
A
373 384Right-handed alpha
Helix 12
AB3
A
384 393Right-handed alpha
Helix 13
AB4
A
417 430Right-handed alpha
Helix 14
AB5
A
445 461Right-handed alpha
Helix 15
AB6
A
476 491Right-handed alpha
Helix 16
AB7
A
492 493Right-handed 310
Helix 17
AB8
A
494 495Right-handed 310
Helix 18
AB9
A
496 502Right-handed alpha
Helix 19
AC1
B
155 161Right-handed 310
Helix 20
AC2
B
175 188Right-handed alpha
Helix 21
AC3
B
204 209Right-handed alpha
Helix 22
AC4
B
213 223Right-handed alpha
Helix 23
AC5
B
224 226Right-handed 310
Helix 24
AC6
B
240 261Right-handed alpha
Helix 25
AC7
B
290 302Right-handed alpha
Helix 26
AC8
B
317 325Right-handed alpha
Helix 27
AC9
B
339 342Right-handed 310
Helix 28
AD1
B
355 359Right-handed 310
Helix 29
AD2
B
373 384Right-handed alpha
Helix 30
AD3
B
384 393Right-handed alpha
Helix 31
AD4
B
417 430Right-handed alpha
Helix 32
AD5
B
431 433Right-handed 310
Helix 33
AD6
B
445 461Right-handed alpha
Helix 34
AD7
B
476 491Right-handed alpha
Helix 35
AD8
B
492 493Right-handed 310
Helix 36
AD9
B
494 495Right-handed 310
Helix 37
AE1
B
496 506Right-handed alpha
Helix 38
AE2
C
155 161Right-handed 310
Helix 39
AE3
C
175 188Right-handed alpha
Helix 40
AE4
C
204 209Right-handed alpha
Helix 41
AE5
C
213 223Right-handed alpha
Helix 42
AE6
C
224 226Right-handed 310
Helix 43
AE7
C
240 261Right-handed alpha
Helix 44
AE8
C
290 302Right-handed alpha
Helix 45
AE9
C
317 325Right-handed alpha
Helix 46
AF1
C
339 342Right-handed 310
Helix 47
AF2
C
373 384Right-handed alpha
Helix 48
AF3
C
384 393Right-handed alpha
Helix 49
AF4
C
417 431Right-handed alpha
Helix 50
AF5
C
432 434Right-handed 310
Helix 51
AF6
C
445 462Right-handed alpha
Helix 52
AF7
C
477 491Right-handed alpha
Helix 53
AF8
C
496 503Right-handed alpha
Helix 54
AF9
D
155 161Right-handed 310
Helix 55
AG1
D
175 188Right-handed alpha
Helix 56
AG2
D
204 209Right-handed alpha
Helix 57
AG3
D
213 223Right-handed alpha
Helix 58
AG4
D
224 226Right-handed 310
Helix 59
AG5
D
240 261Right-handed alpha
Helix 60
AG6
D
290 303Right-handed alpha
Helix 61
AG7
D
317 324Right-handed alpha
Helix 62
AG8
D
339 342Right-handed 310
Helix 63
AG9
D
373 384Right-handed alpha
Helix 64
AH1
D
384 393Right-handed alpha
Helix 65
AH2
D
417 430Right-handed alpha
Helix 66
AH3
D
445 461Right-handed alpha
Helix 67
AH4
D
476 491Right-handed alpha
Helix 68
AH5
D
492 493Right-handed 310
Helix 69
AH6
D
494 495Right-handed 310
Helix 70
AH7
D
496 505Right-handed alpha
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There are 6 sheets in PDB entry 6J6T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 197first strand
Strand 2
A
150 153parallel
Strand 3
A
266 269parallel
Strand 4
A
437 440parallel
Strand 5
A
396 401parallel
Strand 6
A
307 311parallel
Strand 7
A
330 337parallel
Strand 8
A
362 367parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 238first strand
Strand 2
A
228 232anti-parallel
Strand 3
D
228 232anti-parallel
Strand 4
D
235 238anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 197first strand
Strand 2
B
150 153parallel
Strand 3
B
266 269parallel
Strand 4
B
437 440parallel
Strand 5
B
396 401parallel
Strand 6
B
307 311parallel
Strand 7
B
330 337parallel
Strand 8
B
362 367parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
235 238first strand
Strand 2
B
228 232anti-parallel
Strand 3
C
228 232anti-parallel
Strand 4
C
235 238anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
196 197first strand
Strand 2
C
151 153parallel
Strand 3
C
267 269parallel
Strand 4
C
436 440parallel
Strand 5
C
396 401parallel
Strand 6
C
307 311parallel
Strand 7
C
330 337parallel
Strand 8
C
362 367parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
196 197first strand
Strand 2
D
150 153parallel
Strand 3
D
266 269parallel
Strand 4
D
437 440parallel
Strand 5
D
396 401parallel
Strand 6
D
307 311parallel
Strand 7
D
330 337parallel
Strand 8
D
362 367parallel
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