Analysis of interatomic Contacts of Structural Units in PDB entry:
6J6U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6J6U entry

There are 2 chains in PDB entry 6J6U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1699	SER 2285
B	ALA 1699	THR 2286

There are 34 helices in PDB entry 6J6U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1704	1715	Right-handed alpha
Helix 2	AA2	A	1716	1726	Right-handed alpha
Helix 3	AA3	A	1744	1748	Right-handed 310
Helix 4	AA4	A	1808	1819	Right-handed alpha
Helix 5	AA5	A	1909	1924	Right-handed alpha
Helix 6	AA6	A	1938	1957	Right-handed alpha
Helix 7	AA7	A	1961	1973	Right-handed alpha
Helix 8	AA8	A	1979	1997	Right-handed alpha
Helix 9	AA9	A	2005	2013	Right-handed alpha
Helix 10	AB1	A	2022	2032	Right-handed alpha
Helix 11	AB2	A	2049	2053	Right-handed 310
Helix 12	AB3	A	2103	2115	Right-handed alpha
Helix 13	AB4	A	2198	2200	Right-handed 310
Helix 14	AB5	A	2201	2216	Right-handed alpha
Helix 15	AB6	A	2228	2248	Right-handed alpha
Helix 16	AB7	A	2251	2263	Right-handed alpha
Helix 17	AB8	A	2269	2284	Right-handed alpha
Helix 18	AB9	B	1704	1715	Right-handed alpha
Helix 19	AC1	B	1716	1726	Right-handed alpha
Helix 20	AC2	B	1744	1748	Right-handed 310
Helix 21	AC3	B	1808	1819	Right-handed alpha
Helix 22	AC4	B	1909	1924	Right-handed alpha
Helix 23	AC5	B	1938	1957	Right-handed alpha
Helix 24	AC6	B	1961	1973	Right-handed alpha
Helix 25	AC7	B	1979	1997	Right-handed alpha
Helix 26	AC8	B	2005	2013	Right-handed alpha
Helix 27	AC9	B	2022	2032	Right-handed alpha
Helix 28	AD1	B	2046	2053	Right-handed 310
Helix 29	AD2	B	2103	2115	Right-handed alpha
Helix 30	AD3	B	2198	2200	Right-handed 310
Helix 31	AD4	B	2201	2216	Right-handed alpha
Helix 32	AD5	B	2228	2248	Right-handed alpha
Helix 33	AD6	B	2251	2263	Right-handed alpha
Helix 34	AD7	B	2269	2284	Right-handed alpha

There are 12 sheets in PDB entry 6J6U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1700	1701	first strand
Strand 2	A	1959	1960	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1767	1769	first strand
Strand 2	A	1783	1791	anti-parallel
Strand 3	A	1794	1801	anti-parallel
Strand 4	A	1930	1933	parallel
Strand 5	A	1823	1826	parallel
Strand 6	A	1890	1897	parallel
Strand 7	A	1866	1875	anti-parallel
Strand 8	A	1853	1862	anti-parallel
Strand 9	A	1847	1850	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1831	1832	first strand
Strand 2	A	1835	1836	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2001	2002	first strand
Strand 2	A	2249	2250	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2065	2067	first strand
Strand 2	A	2078	2084	anti-parallel
Strand 3	A	2093	2096	anti-parallel
Strand 4	A	2220	2223	parallel
Strand 5	A	2118	2121	parallel
Strand 6	A	2181	2188	parallel
Strand 7	A	2165	2175	anti-parallel
Strand 8	A	2148	2152	anti-parallel
Strand 9	A	2143	2145	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2065	2067	first strand
Strand 2	A	2078	2084	anti-parallel
Strand 3	A	2093	2096	anti-parallel
Strand 4	A	2220	2223	parallel
Strand 5	A	2118	2121	parallel
Strand 6	A	2181	2188	parallel
Strand 7	A	2165	2175	anti-parallel
Strand 8	A	2156	2159	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1700	1701	first strand
Strand 2	B	1959	1960	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1786	1791	first strand
Strand 2	B	1794	1801	anti-parallel
Strand 3	B	1930	1933	parallel
Strand 4	B	1823	1826	parallel
Strand 5	B	1891	1897	parallel
Strand 6	B	1866	1873	anti-parallel
Strand 7	B	1855	1862	anti-parallel
Strand 8	B	1847	1848	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1831	1832	first strand
Strand 2	B	1835	1836	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2001	2002	first strand
Strand 2	B	2249	2250	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2065	2067	first strand
Strand 2	B	2078	2084	anti-parallel
Strand 3	B	2093	2096	anti-parallel
Strand 4	B	2220	2223	parallel
Strand 5	B	2118	2121	parallel
Strand 6	B	2181	2188	parallel
Strand 7	B	2165	2175	anti-parallel
Strand 8	B	2148	2152	anti-parallel
Strand 9	B	2143	2145	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2065	2067	first strand
Strand 2	B	2078	2084	anti-parallel
Strand 3	B	2093	2096	anti-parallel
Strand 4	B	2220	2223	parallel
Strand 5	B	2118	2121	parallel
Strand 6	B	2181	2188	parallel
Strand 7	B	2165	2175	anti-parallel
Strand 8	B	2156	2159	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6J6U

Analysis of interatomic Contacts of Structural Units in PDB entry:
6J6U