Analysis of interatomic Contacts of Structural Units in PDB entry:
6J71

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6J71 entry

There are 2 chains in PDB entry 6J71 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 22	ASP 639
B	ALA 5	SER 258

There are 20 helices in PDB entry 6J71. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	40	Right-handed 310
Helix 2	AA2	A	41	51	Right-handed alpha
Helix 3	AA3	A	71	75	Right-handed 310
Helix 4	AA4	A	107	111	Right-handed 310
Helix 5	AA5	A	168	173	Right-handed alpha
Helix 6	AA6	A	208	212	Right-handed 310
Helix 7	AA7	A	347	351	Right-handed 310
Helix 8	AA8	A	360	365	Right-handed 310
Helix 9	AA9	A	377	382	Right-handed alpha
Helix 10	AB1	A	395	403	Right-handed 310
Helix 11	AB2	A	422	426	Right-handed 310
Helix 12	AB3	A	436	439	Right-handed 310
Helix 13	AB4	A	481	485	Right-handed 310
Helix 14	AB5	A	500	506	Right-handed alpha
Helix 15	AB6	A	515	519	Right-handed 310
Helix 16	AB7	B	167	170	Right-handed 310
Helix 17	AB8	B	201	204	Right-handed 310
Helix 18	AB9	B	213	215	Right-handed 310
Helix 19	AC1	B	226	230	Right-handed 310
Helix 20	AC2	B	240	244	Right-handed 310

There are 17 sheets in PDB entry 6J71. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	27	first strand
Strand 2	A	55	57	parallel
Strand 3	A	79	80	parallel
Strand 4	A	101	102	parallel
Strand 5	A	147	148	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	63	first strand
Strand 2	A	84	87	parallel
Strand 3	A	114	117	parallel
Strand 4	A	153	156	parallel
Strand 5	A	182	184	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	260	first strand
Strand 2	A	263	265	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	290	first strand
Strand 2	A	295	296	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	305	first strand
Strand 2	A	311	312	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	322	first strand
Strand 2	A	330	333	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	369	370	first strand
Strand 2	A	405	406	parallel
Strand 3	A	430	431	parallel
Strand 4	A	460	461	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	376	first strand
Strand 2	A	410	412	parallel
Strand 3	A	441	446	parallel
Strand 4	A	465	469	parallel
Strand 5	A	493	496	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	536	first strand
Strand 2	A	539	541	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	553	556	first strand
Strand 2	A	559	562	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	590	592	first strand
Strand 2	A	595	597	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	602	604	first strand
Strand 2	A	613	616	anti-parallel
Strand 3	A	624	625	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	B	24	30	anti-parallel
Strand 3	B	81	86	anti-parallel
Strand 4	B	73	78	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	18	first strand
Strand 2	B	113	117	parallel
Strand 3	B	96	101	anti-parallel
Strand 4	B	44	49	anti-parallel
Strand 5	B	56	60	anti-parallel
Strand 6	B	64	65	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	18	first strand
Strand 2	B	113	117	parallel
Strand 3	B	96	101	anti-parallel
Strand 4	B	108	109	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	145	first strand
Strand 2	B	157	164	anti-parallel
Strand 3	B	217	222	anti-parallel
Strand 4	B	207	212	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	151	first strand
Strand 2	B	253	257	parallel
Strand 3	B	231	238	anti-parallel
Strand 4	B	172	178	anti-parallel
Strand 5	B	184	191	anti-parallel
Strand 6	B	197	199	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6J71

Analysis of interatomic Contacts of Structural Units in PDB entry:
6J71