Analysis of interatomic Contacts of Structural Units in PDB entry:
6J75

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6J75 entry

There are 4 chains in PDB entry 6J75 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 3	TYR 479
B	GLN 3	TYR 479
C	GLN 3	TYR 479
D	GLN 3	TYR 479

There are 77 helices in PDB entry 6J75. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	41	Right-handed 310
Helix 2	AA2	A	42	60	Right-handed alpha
Helix 3	AA3	A	61	79	Right-handed alpha
Helix 4	AA4	A	79	92	Right-handed alpha
Helix 5	AA5	A	94	114	Right-handed alpha
Helix 6	AA6	A	151	166	Right-handed alpha
Helix 7	AA7	A	179	184	Right-handed alpha
Helix 8	AA8	A	184	193	Right-handed alpha
Helix 9	AA9	A	208	215	Right-handed alpha
Helix 10	AB1	A	227	238	Right-handed alpha
Helix 11	AB2	A	239	241	Right-handed 310
Helix 12	AB3	A	262	276	Right-handed alpha
Helix 13	AB4	A	277	280	Right-handed 310
Helix 14	AB5	A	294	308	Right-handed alpha
Helix 15	AB6	A	326	343	Right-handed alpha
Helix 16	AB7	A	356	360	Right-handed 310
Helix 17	AB8	A	377	381	Right-handed 310
Helix 18	AB9	A	396	406	Right-handed alpha
Helix 19	AC1	A	419	430	Right-handed alpha
Helix 20	AC2	A	461	468	Right-handed alpha
Helix 21	AC3	B	39	41	Right-handed 310
Helix 22	AC4	B	42	58	Right-handed alpha
Helix 23	AC5	B	61	79	Right-handed alpha
Helix 24	AC6	B	79	92	Right-handed alpha
Helix 25	AC7	B	94	114	Right-handed alpha
Helix 26	AC8	B	151	166	Right-handed alpha
Helix 27	AC9	B	179	184	Right-handed alpha
Helix 28	AD1	B	184	193	Right-handed alpha
Helix 29	AD2	B	208	216	Right-handed alpha
Helix 30	AD3	B	227	238	Right-handed alpha
Helix 31	AD4	B	262	276	Right-handed alpha
Helix 32	AD5	B	277	280	Right-handed 310
Helix 33	AD6	B	294	307	Right-handed alpha
Helix 34	AD7	B	326	343	Right-handed alpha
Helix 35	AD8	B	356	360	Right-handed 310
Helix 36	AD9	B	377	381	Right-handed 310
Helix 37	AE1	B	396	406	Right-handed alpha
Helix 38	AE2	B	419	430	Right-handed alpha
Helix 39	AE3	B	461	468	Right-handed alpha
Helix 40	AE4	C	39	41	Right-handed 310
Helix 41	AE5	C	42	58	Right-handed alpha
Helix 42	AE6	C	61	79	Right-handed alpha
Helix 43	AE7	C	79	92	Right-handed alpha
Helix 44	AE8	C	94	115	Right-handed alpha
Helix 45	AE9	C	116	119	Right-handed 310
Helix 46	AF1	C	151	166	Right-handed alpha
Helix 47	AF2	C	179	185	Right-handed alpha
Helix 48	AF3	C	185	193	Right-handed alpha
Helix 49	AF4	C	208	216	Right-handed alpha
Helix 50	AF5	C	227	238	Right-handed alpha
Helix 51	AF6	C	262	276	Right-handed alpha
Helix 52	AF7	C	277	280	Right-handed 310
Helix 53	AF8	C	294	308	Right-handed alpha
Helix 54	AF9	C	326	343	Right-handed alpha
Helix 55	AG1	C	356	360	Right-handed 310
Helix 56	AG2	C	377	381	Right-handed 310
Helix 57	AG3	C	396	406	Right-handed alpha
Helix 58	AG4	C	419	430	Right-handed alpha
Helix 59	AG5	C	461	468	Right-handed alpha
Helix 60	AG6	D	39	41	Right-handed 310
Helix 61	AG7	D	42	58	Right-handed alpha
Helix 62	AG8	D	61	79	Right-handed alpha
Helix 63	AG9	D	79	91	Right-handed alpha
Helix 64	AH1	D	94	115	Right-handed alpha
Helix 65	AH2	D	151	166	Right-handed alpha
Helix 66	AH3	D	179	184	Right-handed alpha
Helix 67	AH4	D	184	193	Right-handed alpha
Helix 68	AH5	D	208	215	Right-handed alpha
Helix 69	AH6	D	227	239	Right-handed alpha
Helix 70	AH7	D	262	276	Right-handed alpha
Helix 71	AH8	D	277	280	Right-handed 310
Helix 72	AH9	D	294	307	Right-handed alpha
Helix 73	AI1	D	326	344	Right-handed alpha
Helix 74	AI2	D	377	381	Right-handed 310
Helix 75	AI3	D	396	406	Right-handed alpha
Helix 76	AI4	D	419	430	Right-handed alpha
Helix 77	AI5	D	461	468	Right-handed alpha

There are 18 sheets in PDB entry 6J75. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	8	first strand
Strand 2	A	11	13	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	24	first strand
Strand 2	A	31	36	anti-parallel

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There are 20 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	349	first strand
Strand 2	B	368	371	anti-parallel
Strand 3	B	388	394	parallel
Strand 4	B	285	291	parallel
Strand 5	B	253	257	parallel
Strand 6	B	412	416	parallel
Strand 7	B	434	437	parallel
Strand 8	A	470	478	parallel
Strand 9	A	131	139	anti-parallel
Strand 10	A	121	125	anti-parallel
Strand 11	C	121	124	anti-parallel
Strand 12	C	131	139	anti-parallel
Strand 13	C	470	478	anti-parallel
Strand 14	D	434	437	parallel
Strand 15	D	412	416	parallel
Strand 16	D	254	257	parallel
Strand 17	D	287	291	parallel
Strand 18	D	388	394	parallel
Strand 19	D	368	371	parallel
Strand 20	D	346	349	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	201	first strand
Strand 2	A	169	174	parallel
Strand 3	A	142	147	parallel
Strand 4	A	221	225	parallel
Strand 5	A	244	248	parallel

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There are 20 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	349	first strand
Strand 2	A	368	371	anti-parallel
Strand 3	A	388	394	parallel
Strand 4	A	285	291	parallel
Strand 5	A	253	257	parallel
Strand 6	A	412	416	parallel
Strand 7	A	434	437	parallel
Strand 8	B	470	478	parallel
Strand 9	B	131	139	anti-parallel
Strand 10	B	121	124	anti-parallel
Strand 11	D	121	124	anti-parallel
Strand 12	D	131	139	anti-parallel
Strand 13	D	470	478	anti-parallel
Strand 14	C	434	437	parallel
Strand 15	C	412	416	parallel
Strand 16	C	253	257	parallel
Strand 17	C	285	291	parallel
Strand 18	C	388	394	parallel
Strand 19	C	368	371	parallel
Strand 20	C	346	349	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	410	first strand
Strand 2	A	452	453	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	8	first strand
Strand 2	B	11	13	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	24	first strand
Strand 2	B	31	36	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	201	first strand
Strand 2	B	169	174	parallel
Strand 3	B	142	147	parallel
Strand 4	B	221	225	parallel
Strand 5	B	244	248	parallel
Strand 6	B	456	457	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	410	first strand
Strand 2	B	452	453	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	8	first strand
Strand 2	C	11	13	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	24	first strand
Strand 2	C	31	36	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	201	first strand
Strand 2	C	169	174	parallel
Strand 3	C	142	147	parallel
Strand 4	C	221	225	parallel
Strand 5	C	244	248	parallel
Strand 6	C	456	457	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	410	first strand
Strand 2	C	452	453	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	8	first strand
Strand 2	D	11	13	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	24	first strand
Strand 2	D	31	36	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	201	first strand
Strand 2	D	169	174	parallel
Strand 3	D	142	147	parallel
Strand 4	D	221	225	parallel
Strand 5	D	244	248	parallel
Strand 6	D	456	457	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	409	410	first strand
Strand 2	D	452	453	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6J75

Analysis of interatomic Contacts of Structural Units in PDB entry:
6J75