Analysis of interatomic Contacts of Structural Units in PDB entry:
6J76


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J76 entry

There are 2 chains in PDB entry 6J76 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3TYR 479
B
 LYS 2ASN 478
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 6J76. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 41Right-handed 310
Helix 2
AA2
A
42 60Right-handed alpha
Helix 3
AA3
A
61 79Right-handed alpha
Helix 4
AA4
A
79 92Right-handed alpha
Helix 5
AA5
A
94 114Right-handed alpha
Helix 6
AA6
A
115 118Right-handed 310
Helix 7
AA7
A
151 166Right-handed alpha
Helix 8
AA8
A
179 193Right-handed alpha
Helix 9
AA9
A
208 216Right-handed alpha
Helix 10
AB1
A
227 238Right-handed alpha
Helix 11
AB2
A
262 276Right-handed alpha
Helix 12
AB3
A
277 280Right-handed 310
Helix 13
AB4
A
294 308Right-handed alpha
Helix 14
AB5
A
326 344Right-handed alpha
Helix 15
AB6
A
377 381Right-handed 310
Helix 16
AB7
A
396 406Right-handed alpha
Helix 17
AB8
A
419 430Right-handed alpha
Helix 18
AB9
A
461 467Right-handed alpha
Helix 19
AC1
B
39 41Right-handed 310
Helix 20
AC2
B
42 60Right-handed alpha
Helix 21
AC3
B
61 79Right-handed alpha
Helix 22
AC4
B
79 92Right-handed alpha
Helix 23
AC5
B
94 114Right-handed alpha
Helix 24
AC6
B
115 118Right-handed 310
Helix 25
AC7
B
151 166Right-handed alpha
Helix 26
AC8
B
179 193Right-handed alpha
Helix 27
AC9
B
208 215Right-handed alpha
Helix 28
AD1
B
227 239Right-handed alpha
Helix 29
AD2
B
262 276Right-handed alpha
Helix 30
AD3
B
277 280Right-handed 310
Helix 31
AD4
B
294 308Right-handed alpha
Helix 32
AD5
B
326 343Right-handed alpha
Helix 33
AD6
B
356 360Right-handed 310
Helix 34
AD7
B
377 381Right-handed 310
Helix 35
AD8
B
396 406Right-handed alpha
Helix 36
AD9
B
419 430Right-handed alpha
Helix 37
AE1
B
461 467Right-handed alpha
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There are 10 sheets in PDB entry 6J76. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
11 13anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
31 36anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 125first strand
Strand 2
A
131 139anti-parallel
Strand 3
A
470 478anti-parallel
Strand 4
B
434 437parallel
Strand 5
B
412 416parallel
Strand 6
B
253 257parallel
Strand 7
B
285 291parallel
Strand 8
B
388 394parallel
Strand 9
B
368 371parallel
Strand 10
B
346 349anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 201first strand
Strand 2
A
169 173parallel
Strand 3
A
142 146parallel
Strand 4
A
221 225parallel
Strand 5
A
244 248parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 349first strand
Strand 2
A
368 371anti-parallel
Strand 3
A
388 394parallel
Strand 4
A
285 291parallel
Strand 5
A
253 257parallel
Strand 6
A
412 416parallel
Strand 7
A
434 437parallel
Strand 8
B
470 477parallel
Strand 9
B
132 139anti-parallel
Strand 10
B
122 125anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 410first strand
Strand 2
A
452 453anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 8first strand
Strand 2
B
11 13anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 24first strand
Strand 2
B
31 36anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 201first strand
Strand 2
B
169 173parallel
Strand 3
B
142 146parallel
Strand 4
B
221 225parallel
Strand 5
B
244 248parallel
Strand 6
B
456 457anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
409 410first strand
Strand 2
B
452 453anti-parallel
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