Analysis of interatomic Contacts of Structural Units in PDB entry:
6J79


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J79 entry

There are 2 chains in PDB entry 6J79 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 10SER 851
B
 SER 10ARG 463
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 73 helices in PDB entry 6J79. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 30Right-handed alpha
Helix 2
AA2
A
31 39Right-handed alpha
Helix 3
AA3
A
43 68Right-handed alpha
Helix 4
AA4
A
74 78Right-handed 310
Helix 5
AA5
A
79 84Right-handed alpha
Helix 6
AA6
A
85 97Right-handed alpha
Helix 7
AA7
A
100 105Right-handed alpha
Helix 8
AA8
A
108 125Right-handed alpha
Helix 9
AA9
A
128 141Right-handed alpha
Helix 10
AB1
A
143 155Right-handed alpha
Helix 11
AB2
A
164 168Right-handed 310
Helix 12
AB3
A
174 189Right-handed alpha
Helix 13
AB4
A
192 220Right-handed alpha
Helix 14
AB5
A
245 254Right-handed alpha
Helix 15
AB6
A
266 278Right-handed alpha
Helix 16
AB7
A
295 302Right-handed 310
Helix 17
AB8
A
326 335Right-handed alpha
Helix 18
AB9
A
359 373Right-handed alpha
Helix 19
AC1
A
388 409Right-handed alpha
Helix 20
AC2
A
427 431Right-handed 310
Helix 21
AC3
A
481 484Right-handed 310
Helix 22
AC4
A
500 512Right-handed alpha
Helix 23
AC5
A
540 547Right-handed alpha
Helix 24
AC6
A
555 563Right-handed alpha
Helix 25
AC7
A
564 566Right-handed 310
Helix 26
AC8
A
568 578Right-handed alpha
Helix 27
AC9
A
582 593Right-handed alpha
Helix 28
AD1
A
599 607Right-handed alpha
Helix 29
AD2
A
613 621Right-handed alpha
Helix 30
AD3
A
661 669Right-handed alpha
Helix 31
AD4
A
710 726Right-handed alpha
Helix 32
AD5
A
748 758Right-handed alpha
Helix 33
AD6
A
777 785Right-handed alpha
Helix 34
AD7
A
785 796Right-handed alpha
Helix 35
AD8
A
808 825Right-handed alpha
Helix 36
AD9
A
828 842Right-handed alpha
Helix 37
AE1
B
12 30Right-handed alpha
Helix 38
AE2
B
31 39Right-handed alpha
Helix 39
AE3
B
43 68Right-handed alpha
Helix 40
AE4
B
74 78Right-handed 310
Helix 41
AE5
B
79 84Right-handed alpha
Helix 42
AE6
B
85 97Right-handed alpha
Helix 43
AE7
B
100 105Right-handed alpha
Helix 44
AE8
B
108 125Right-handed alpha
Helix 45
AE9
B
128 141Right-handed alpha
Helix 46
AF1
B
143 155Right-handed alpha
Helix 47
AF2
B
164 168Right-handed 310
Helix 48
AF3
B
174 189Right-handed alpha
Helix 49
AF4
B
192 220Right-handed alpha
Helix 50
AF5
B
246 254Right-handed alpha
Helix 51
AF6
B
266 278Right-handed alpha
Helix 52
AF7
B
295 306Right-handed 310
Helix 53
AF8
B
326 335Right-handed alpha
Helix 54
AF9
B
352 356Right-handed 310
Helix 55
AG1
B
359 373Right-handed alpha
Helix 56
AG2
B
388 409Right-handed alpha
Helix 57
AG3
B
427 431Right-handed 310
Helix 58
AG4
B
481 484Right-handed 310
Helix 59
AG5
B
500 512Right-handed alpha
Helix 60
AG6
B
540 547Right-handed alpha
Helix 61
AG7
B
555 563Right-handed alpha
Helix 62
AG8
B
564 566Right-handed 310
Helix 63
AG9
B
568 578Right-handed alpha
Helix 64
AH1
B
582 593Right-handed alpha
Helix 65
AH2
B
599 607Right-handed alpha
Helix 66
AH3
B
613 621Right-handed alpha
Helix 67
AH4
B
661 669Right-handed alpha
Helix 68
AH5
B
710 726Right-handed alpha
Helix 69
AH6
B
748 758Right-handed alpha
Helix 70
AH7
B
777 785Right-handed alpha
Helix 71
AH8
B
785 796Right-handed alpha
Helix 72
AH9
B
808 825Right-handed alpha
Helix 73
AI1
B
828 842Right-handed alpha
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There are 12 sheets in PDB entry 6J79. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 289first strand
Strand 2
A
257 262parallel
Strand 3
A
309 317parallel
Strand 4
A
344 351parallel
Strand 5
A
375 376parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 322first strand
Strand 2
A
309 317anti-parallel
Strand 3
A
344 351parallel
Strand 4
A
381 384parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 422first strand
Strand 2
A
518 523anti-parallel
Strand 3
A
538 539anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
627 630first strand
Strand 2
A
492 495anti-parallel
Strand 3
A
681 687anti-parallel
Strand 4
A
455 464anti-parallel
Strand 5
A
473 479anti-parallel
Strand 6
A
641 647anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
650 652first strand
Strand 2
A
658 660anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
763 768first strand
Strand 2
A
733 739parallel
Strand 3
A
701 706parallel
Strand 4
A
799 804parallel
Strand 5
A
845 849parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
286 289first strand
Strand 2
B
257 262parallel
Strand 3
B
309 317parallel
Strand 4
B
344 351parallel
Strand 5
B
375 376parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
321 322first strand
Strand 2
B
309 317anti-parallel
Strand 3
B
344 351parallel
Strand 4
B
381 384parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
418 422first strand
Strand 2
B
518 523anti-parallel
Strand 3
B
538 539anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
627 630first strand
Strand 2
B
492 495anti-parallel
Strand 3
B
681 687anti-parallel
Strand 4
B
455 464anti-parallel
Strand 5
B
473 479anti-parallel
Strand 6
B
641 647anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
650 652first strand
Strand 2
B
658 660anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
763 768first strand
Strand 2
B
733 739parallel
Strand 3
B
701 706parallel
Strand 4
B
799 804parallel
Strand 5
B
845 849parallel
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