Analysis of interatomic Contacts of Structural Units in PDB entry:
6J7A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J7A entry

There are 2 chains in PDB entry 6J7A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 10SER 855
B
 SER 10LEU 469
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 6J7A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 21Right-handed alpha
Helix 2
AA2
A
21 30Right-handed alpha
Helix 3
AA3
A
31 39Right-handed alpha
Helix 4
AA4
A
43 68Right-handed alpha
Helix 5
AA5
A
74 78Right-handed 310
Helix 6
AA6
A
79 84Right-handed alpha
Helix 7
AA7
A
85 98Right-handed alpha
Helix 8
AA8
A
100 105Right-handed alpha
Helix 9
AA9
A
108 125Right-handed alpha
Helix 10
AB1
A
128 141Right-handed alpha
Helix 11
AB2
A
143 156Right-handed alpha
Helix 12
AB3
A
164 168Right-handed 310
Helix 13
AB4
A
174 188Right-handed alpha
Helix 14
AB5
A
192 220Right-handed alpha
Helix 15
AB6
A
249 258Right-handed alpha
Helix 16
AB7
A
270 285Right-handed alpha
Helix 17
AB8
A
299 304Right-handed 310
Helix 18
AB9
A
305 309Right-handed 310
Helix 19
AC1
A
330 337Right-handed alpha
Helix 20
AC2
A
363 374Right-handed alpha
Helix 21
AC3
A
392 413Right-handed alpha
Helix 22
AC4
A
431 435Right-handed 310
Helix 23
AC5
A
504 516Right-handed alpha
Helix 24
AC6
A
544 551Right-handed alpha
Helix 25
AC7
A
559 568Right-handed alpha
Helix 26
AC8
A
572 582Right-handed alpha
Helix 27
AC9
A
587 597Right-handed alpha
Helix 28
AD1
A
603 611Right-handed alpha
Helix 29
AD2
A
617 625Right-handed alpha
Helix 30
AD3
A
665 673Right-handed alpha
Helix 31
AD4
A
714 730Right-handed alpha
Helix 32
AD5
A
752 762Right-handed alpha
Helix 33
AD6
A
781 789Right-handed alpha
Helix 34
AD7
A
789 799Right-handed alpha
Helix 35
AD8
A
812 829Right-handed alpha
Helix 36
AD9
A
832 846Right-handed alpha
Helix 37
AE1
B
12 21Right-handed alpha
Helix 38
AE2
B
21 30Right-handed alpha
Helix 39
AE3
B
31 39Right-handed alpha
Helix 40
AE4
B
43 68Right-handed alpha
Helix 41
AE5
B
74 78Right-handed 310
Helix 42
AE6
B
79 84Right-handed alpha
Helix 43
AE7
B
85 98Right-handed alpha
Helix 44
AE8
B
100 105Right-handed alpha
Helix 45
AE9
B
108 125Right-handed alpha
Helix 46
AF1
B
128 141Right-handed alpha
Helix 47
AF2
B
143 156Right-handed alpha
Helix 48
AF3
B
164 168Right-handed 310
Helix 49
AF4
B
174 189Right-handed alpha
Helix 50
AF5
B
192 219Right-handed alpha
Helix 51
AF6
B
249 258Right-handed alpha
Helix 52
AF7
B
270 285Right-handed alpha
Helix 53
AF8
B
299 304Right-handed 310
Helix 54
AF9
B
330 339Right-handed alpha
Helix 55
AG1
B
363 376Right-handed alpha
Helix 56
AG2
B
392 412Right-handed alpha
Helix 57
AG3
B
431 435Right-handed 310
Helix 58
AG4
B
504 516Right-handed alpha
Helix 59
AG5
B
544 551Right-handed alpha
Helix 60
AG6
B
559 567Right-handed alpha
Helix 61
AG7
B
568 570Right-handed 310
Helix 62
AG8
B
572 582Right-handed alpha
Helix 63
AG9
B
588 597Right-handed alpha
Helix 64
AH1
B
603 611Right-handed alpha
Helix 65
AH2
B
617 625Right-handed alpha
Helix 66
AH3
B
665 674Right-handed alpha
Helix 67
AH4
B
714 730Right-handed alpha
Helix 68
AH5
B
752 762Right-handed alpha
Helix 69
AH6
B
781 789Right-handed alpha
Helix 70
AH7
B
789 799Right-handed alpha
Helix 71
AH8
B
812 828Right-handed alpha
Helix 72
AH9
B
832 846Right-handed alpha
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There are 12 sheets in PDB entry 6J7A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 293first strand
Strand 2
A
261 266parallel
Strand 3
A
313 321parallel
Strand 4
A
348 355parallel
Strand 5
A
379 380parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
313 321anti-parallel
Strand 3
A
348 355parallel
Strand 4
A
385 388parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 426first strand
Strand 2
A
522 527anti-parallel
Strand 3
A
542 543anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
631 634first strand
Strand 2
A
496 499anti-parallel
Strand 3
A
685 691anti-parallel
Strand 4
A
459 468anti-parallel
Strand 5
A
477 483anti-parallel
Strand 6
A
645 651anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
654 656first strand
Strand 2
A
662 664anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
767 772first strand
Strand 2
A
737 743parallel
Strand 3
A
705 710parallel
Strand 4
A
803 808parallel
Strand 5
A
849 853parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
290 293first strand
Strand 2
B
261 266parallel
Strand 3
B
313 321parallel
Strand 4
B
348 354parallel
Strand 5
B
379 380parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 326first strand
Strand 2
B
313 321anti-parallel
Strand 3
B
348 354parallel
Strand 4
B
385 387parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
422 426first strand
Strand 2
B
522 527anti-parallel
Strand 3
B
542 543anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
631 634first strand
Strand 2
B
496 499anti-parallel
Strand 3
B
685 691anti-parallel
Strand 4
B
459 468anti-parallel
Strand 5
B
477 483anti-parallel
Strand 6
B
645 651anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
654 656first strand
Strand 2
B
662 664anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
767 772first strand
Strand 2
B
737 743parallel
Strand 3
B
705 710parallel
Strand 4
B
803 809parallel
Strand 5
B
849 854parallel
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