Analysis of interatomic Contacts of Structural Units in PDB entry:
6J7F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J7F entry

There are 3 chains in PDB entry 6J7F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 6LEU 326
B
 THR 3SER 331
C
 MET 1CYS 194
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 6J7F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 26Right-handed alpha
Helix 2
AA2
A
58 77Right-handed alpha
Helix 3
AA3
A
83 96Right-handed alpha
Helix 4
AA4
A
101 114Right-handed alpha
Helix 5
AA5
A
118 130Right-handed alpha
Helix 6
AA6
A
136 150Right-handed alpha
Helix 7
AA7
A
170 191Right-handed alpha
Helix 8
AA8
A
194 208Right-handed alpha
Helix 9
AA9
A
212 229Right-handed alpha
Helix 10
AB1
A
233 251Right-handed alpha
Helix 11
AB2
A
283 304Right-handed alpha
Helix 12
AB3
A
309 325Right-handed alpha
Helix 13
AB4
B
19 29Right-handed alpha
Helix 14
AB5
B
35 43Right-handed alpha
Helix 15
AB6
B
45 60Right-handed alpha
Helix 16
AB7
B
62 66Right-handed 310
Helix 17
AB8
B
67 78Right-handed alpha
Helix 18
AB9
B
94 108Right-handed alpha
Helix 19
AC1
B
110 114Right-handed 310
Helix 20
AC2
B
115 125Right-handed alpha
Helix 21
AC3
B
142 156Right-handed alpha
Helix 22
AC4
B
157 162Right-handed 310
Helix 23
AC5
B
163 173Right-handed alpha
Helix 24
AC6
B
190 204Right-handed alpha
Helix 25
AC7
B
206 210Right-handed 310
Helix 26
AC8
B
211 221Right-handed alpha
Helix 27
AC9
B
240 253Right-handed alpha
Helix 28
AD1
B
254 258Right-handed 310
Helix 29
AD2
B
259 270Right-handed alpha
Helix 30
AD3
B
287 302Right-handed alpha
Helix 31
AD4
B
317 323Right-handed alpha
Helix 32
AD5
C
29 31Right-handed 310
Helix 33
AD6
C
32 49Right-handed alpha
Helix 34
AD7
C
86 105Right-handed alpha
Helix 35
AD8
C
122 130Right-handed alpha
Helix 36
AD9
C
139 145Right-handed alpha
Helix 37
AE1
C
167 172Right-handed alpha
Helix 38
AE2
C
178 187Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 6J7F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 35first strand
Strand 2
A
53 57parallel
Strand 3
A
47 50anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
309 310first strand
Strand 2
B
315 316anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 23first strand
Strand 2
C
3 11anti-parallel
Strand 3
C
75 81anti-parallel
Strand 4
C
64 70anti-parallel
Strand 5
C
55 61anti-parallel
Strand 6
C
152 154parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il