Analysis of interatomic Contacts of Structural Units in PDB entry:
6J7I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J7I entry

There are 2 chains in PDB entry 6J7I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 10SER 853
B
 SER 10ALA 463
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 71 helices in PDB entry 6J7I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 21Right-handed alpha
Helix 2
AA2
A
21 30Right-handed alpha
Helix 3
AA3
A
31 39Right-handed alpha
Helix 4
AA4
A
43 68Right-handed alpha
Helix 5
AA5
A
74 78Right-handed 310
Helix 6
AA6
A
79 84Right-handed alpha
Helix 7
AA7
A
85 98Right-handed alpha
Helix 8
AA8
A
100 105Right-handed alpha
Helix 9
AA9
A
108 125Right-handed alpha
Helix 10
AB1
A
128 141Right-handed alpha
Helix 11
AB2
A
142 156Right-handed alpha
Helix 12
AB3
A
164 168Right-handed 310
Helix 13
AB4
A
174 188Right-handed alpha
Helix 14
AB5
A
192 220Right-handed alpha
Helix 15
AB6
A
247 256Right-handed alpha
Helix 16
AB7
A
268 283Right-handed alpha
Helix 17
AB8
A
297 302Right-handed 310
Helix 18
AB9
A
303 307Right-handed 310
Helix 19
AC1
A
328 337Right-handed alpha
Helix 20
AC2
A
361 374Right-handed alpha
Helix 21
AC3
A
390 410Right-handed alpha
Helix 22
AC4
A
429 433Right-handed 310
Helix 23
AC5
A
502 514Right-handed alpha
Helix 24
AC6
A
542 549Right-handed alpha
Helix 25
AC7
A
557 566Right-handed alpha
Helix 26
AC8
A
570 580Right-handed alpha
Helix 27
AC9
A
585 595Right-handed alpha
Helix 28
AD1
A
601 609Right-handed alpha
Helix 29
AD2
A
615 623Right-handed alpha
Helix 30
AD3
A
663 671Right-handed alpha
Helix 31
AD4
A
712 728Right-handed alpha
Helix 32
AD5
A
750 760Right-handed alpha
Helix 33
AD6
A
779 787Right-handed alpha
Helix 34
AD7
A
787 797Right-handed alpha
Helix 35
AD8
A
810 827Right-handed alpha
Helix 36
AD9
A
830 844Right-handed alpha
Helix 37
AE1
B
12 21Right-handed alpha
Helix 38
AE2
B
21 30Right-handed alpha
Helix 39
AE3
B
31 39Right-handed alpha
Helix 40
AE4
B
43 68Right-handed alpha
Helix 41
AE5
B
74 78Right-handed 310
Helix 42
AE6
B
79 84Right-handed alpha
Helix 43
AE7
B
85 98Right-handed alpha
Helix 44
AE8
B
100 105Right-handed alpha
Helix 45
AE9
B
108 125Right-handed alpha
Helix 46
AF1
B
128 141Right-handed alpha
Helix 47
AF2
B
142 156Right-handed alpha
Helix 48
AF3
B
164 168Right-handed 310
Helix 49
AF4
B
174 189Right-handed alpha
Helix 50
AF5
B
192 220Right-handed alpha
Helix 51
AF6
B
247 256Right-handed alpha
Helix 52
AF7
B
268 283Right-handed alpha
Helix 53
AF8
B
297 302Right-handed 310
Helix 54
AF9
B
328 337Right-handed alpha
Helix 55
AG1
B
361 375Right-handed alpha
Helix 56
AG2
B
390 410Right-handed alpha
Helix 57
AG3
B
429 433Right-handed 310
Helix 58
AG4
B
502 514Right-handed alpha
Helix 59
AG5
B
542 549Right-handed alpha
Helix 60
AG6
B
557 566Right-handed alpha
Helix 61
AG7
B
570 580Right-handed alpha
Helix 62
AG8
B
586 595Right-handed alpha
Helix 63
AG9
B
601 609Right-handed alpha
Helix 64
AH1
B
615 623Right-handed alpha
Helix 65
AH2
B
663 672Right-handed alpha
Helix 66
AH3
B
712 728Right-handed alpha
Helix 67
AH4
B
750 760Right-handed alpha
Helix 68
AH5
B
779 787Right-handed alpha
Helix 69
AH6
B
787 797Right-handed alpha
Helix 70
AH7
B
810 827Right-handed alpha
Helix 71
AH8
B
830 844Right-handed alpha
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There are 12 sheets in PDB entry 6J7I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 291first strand
Strand 2
A
259 264parallel
Strand 3
A
311 319parallel
Strand 4
A
346 353parallel
Strand 5
A
377 378parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 324first strand
Strand 2
A
311 319anti-parallel
Strand 3
A
346 353parallel
Strand 4
A
383 386parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 424first strand
Strand 2
A
520 525anti-parallel
Strand 3
A
540 541anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
629 632first strand
Strand 2
A
494 497anti-parallel
Strand 3
A
683 689anti-parallel
Strand 4
A
457 466anti-parallel
Strand 5
A
475 481anti-parallel
Strand 6
A
643 649anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
652 654first strand
Strand 2
A
660 662anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
765 770first strand
Strand 2
A
735 741parallel
Strand 3
A
703 708parallel
Strand 4
A
801 806parallel
Strand 5
A
847 851parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 291first strand
Strand 2
B
259 264parallel
Strand 3
B
311 319parallel
Strand 4
B
346 352parallel
Strand 5
B
377 378parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
323 324first strand
Strand 2
B
311 319anti-parallel
Strand 3
B
346 352parallel
Strand 4
B
383 385parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
420 424first strand
Strand 2
B
520 525anti-parallel
Strand 3
B
540 541anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
629 632first strand
Strand 2
B
494 497anti-parallel
Strand 3
B
683 689anti-parallel
Strand 4
B
457 466anti-parallel
Strand 5
B
475 481anti-parallel
Strand 6
B
643 649anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
652 654first strand
Strand 2
B
660 662anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
765 770first strand
Strand 2
B
735 741parallel
Strand 3
B
703 708parallel
Strand 4
B
801 807parallel
Strand 5
B
847 852parallel
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