Analysis of interatomic Contacts of Structural Units in PDB entry:
6J7J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J7J entry

There is 1 chain in PDB entry 6J7J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE -2HIS 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6J7J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 32Right-handed alpha
Helix 2
AA2
A
41 49Right-handed alpha
Helix 3
AA3
A
91 101Right-handed alpha
Helix 4
AA4
A
118 123Right-handed alpha
Helix 5
AA5
A
154 164Right-handed alpha
Helix 6
AA6
A
165 176Right-handed alpha
Helix 7
AA7
A
196 207Right-handed alpha
Helix 8
AA8
A
218 229Right-handed alpha
Helix 9
AA9
A
253 264Right-handed alpha
Helix 10
AB1
A
271 281Right-handed alpha
Helix 11
AB2
A
298 310Right-handed alpha
Helix 12
AB3
A
313 330Right-handed alpha
Helix 13
AB4
A
333 342Right-handed alpha
Helix 14
AB5
A
343 360Right-handed alpha
Helix 15
AB6
A
363 380Right-handed alpha
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There are 2 sheets in PDB entry 6J7J. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 61first strand
Strand 2
A
64 68anti-parallel
Strand 3
A
34 39parallel
Strand 4
A
3 8parallel
Strand 5
A
81 85parallel
Strand 6
A
106 110parallel
Strand 7
A
134 138parallel
Strand 8
A
126 128anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
244 249anti-parallel
Strand 3
A
211 216parallel
Strand 4
A
185 189parallel
Strand 5
A
266 270parallel
Strand 6
A
285 288parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il