Analysis of interatomic Contacts of Structural Units in PDB entry:
6J7M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J7M entry

There are 4 chains in PDB entry 6J7M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0LEU 376
C
 HIS 0LEU 376
M
 HIS 0LYS 187
N
 HIS 0ALA 188
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 6J7M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 30Right-handed alpha
Helix 2
AA2
A
41 49Right-handed alpha
Helix 3
AA3
A
91 100Right-handed alpha
Helix 4
AA4
A
117 123Right-handed alpha
Helix 5
AA5
A
154 164Right-handed alpha
Helix 6
AA6
A
165 176Right-handed alpha
Helix 7
AA7
A
196 206Right-handed alpha
Helix 8
AA8
A
220 229Right-handed alpha
Helix 9
AA9
A
253 264Right-handed alpha
Helix 10
AB1
A
272 281Right-handed alpha
Helix 11
AB2
A
292 294Right-handed 310
Helix 12
AB3
A
295 309Right-handed alpha
Helix 13
AB4
A
313 328Right-handed alpha
Helix 14
AB5
A
333 343Right-handed alpha
Helix 15
AB6
A
343 359Right-handed alpha
Helix 16
AB7
A
363 376Right-handed alpha
Helix 17
AB8
C
14 30Right-handed alpha
Helix 18
AB9
C
41 49Right-handed alpha
Helix 19
AC1
C
91 100Right-handed alpha
Helix 20
AC2
C
117 123Right-handed alpha
Helix 21
AC3
C
154 164Right-handed alpha
Helix 22
AC4
C
165 176Right-handed alpha
Helix 23
AC5
C
196 206Right-handed alpha
Helix 24
AC6
C
219 229Right-handed alpha
Helix 25
AC7
C
253 264Right-handed alpha
Helix 26
AC8
C
272 281Right-handed alpha
Helix 27
AC9
C
292 294Right-handed 310
Helix 28
AD1
C
295 309Right-handed alpha
Helix 29
AD2
C
310 312Right-handed 310
Helix 30
AD3
C
313 328Right-handed alpha
Helix 31
AD4
C
333 342Right-handed alpha
Helix 32
AD5
C
343 360Right-handed alpha
Helix 33
AD6
C
363 376Right-handed alpha
Helix 34
AD7
M
5 7Right-handed 310
Helix 35
AD8
M
95 97Right-handed 310
Helix 36
AD9
N
5 7Right-handed 310
Helix 37
AE1
N
95 98Right-handed 310
Helix 38
AE2
N
99 103Right-handed 310
Back to top of page

There are 10 sheets in PDB entry 6J7M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 61first strand
Strand 2
A
64 68anti-parallel
Strand 3
A
34 39parallel
Strand 4
A
3 8parallel
Strand 5
A
81 85parallel
Strand 6
A
106 110parallel
Strand 7
A
135 138parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
244 249anti-parallel
Strand 3
A
211 216parallel
Strand 4
A
185 189parallel
Strand 5
A
266 270parallel
Strand 6
A
285 288parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 61first strand
Strand 2
C
64 68anti-parallel
Strand 3
C
34 39parallel
Strand 4
C
3 8parallel
Strand 5
C
81 85parallel
Strand 6
C
106 110parallel
Strand 7
C
134 138parallel
Strand 8
C
126 128anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
238 241first strand
Strand 2
C
244 249anti-parallel
Strand 3
C
211 216parallel
Strand 4
C
185 189parallel
Strand 5
C
266 270parallel
Strand 6
C
285 288parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
2 3first strand
Strand 2
M
59 63anti-parallel
Strand 3
M
12 15anti-parallel
Strand 4
M
18 29anti-parallel
Strand 5
M
35 43anti-parallel
Strand 6
M
49 55anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
89 93first strand
Strand 2
M
79 84anti-parallel
Strand 3
M
66 75anti-parallel
Strand 4
M
111 116anti-parallel
Strand 5
M
121 125anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
160 164first strand
Strand 2
M
150 155anti-parallel
Strand 3
M
129 137anti-parallel
Strand 4
M
172 176anti-parallel
Strand 5
M
182 185anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
2 3first strand
Strand 2
N
59 63anti-parallel
Strand 3
N
12 14anti-parallel
Strand 4
N
19 29anti-parallel
Strand 5
N
35 43anti-parallel
Strand 6
N
49 55anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
89 93first strand
Strand 2
N
79 83anti-parallel
Strand 3
N
67 76anti-parallel
Strand 4
N
112 117anti-parallel
Strand 5
N
120 125anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
160 163first strand
Strand 2
N
151 155anti-parallel
Strand 3
N
129 137anti-parallel
Strand 4
N
172 176anti-parallel
Strand 5
N
182 185anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il