Analysis of interatomic Contacts of Structural Units in PDB entry:
6J7Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J7Y entry

There are 3 chains in PDB entry 6J7Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 40LYS 218
A
 ALA 34LYS 217
C
 T 1 T 2
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6J7Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
96 103Right-handed alpha
Helix 2
AA2
B
105 113Right-handed alpha
Helix 3
AA3
B
116 132Right-handed alpha
Helix 4
AA4
B
143 155Right-handed alpha
Helix 5
AA5
B
155 162Right-handed alpha
Helix 6
AA6
B
169 180Right-handed alpha
Helix 7
AA7
B
180 186Right-handed alpha
Helix 8
AA8
B
195 215Right-handed alpha
Helix 9
AA9
A
36 41Right-handed alpha
Helix 10
AB1
A
116 132Right-handed alpha
Helix 11
AB2
A
143 155Right-handed alpha
Helix 12
AB3
A
155 161Right-handed alpha
Helix 13
AB4
A
169 180Right-handed alpha
Helix 14
AB5
A
180 186Right-handed alpha
Helix 15
AB6
A
195 215Right-handed alpha
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There are 2 sheets in PDB entry 6J7Y. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 82first strand
Strand 2
B
60 68anti-parallel
Strand 3
B
43 50anti-parallel
Strand 4
B
139 141parallel
Strand 5
B
166 168parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 82first strand
Strand 2
A
62 68anti-parallel
Strand 3
A
43 48anti-parallel
Strand 4
A
139 141parallel
Strand 5
A
166 168parallel
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