Analysis of interatomic Contacts of Structural Units in PDB entry:
6J84


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J84 entry

There is 1 chain in PDB entry 6J84 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 7TRP 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6J84. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 31Right-handed alpha
Helix 2
AA2
A
49 59Right-handed alpha
Helix 3
AA3
A
64 70Right-handed 310
Helix 4
AA4
A
82 87Right-handed 310
Helix 5
AA5
A
90 103Right-handed alpha
Helix 6
AA6
A
104 130Right-handed alpha
Helix 7
AA7
A
139 153Right-handed alpha
Helix 8
AA8
A
155 157Right-handed 310
Helix 9
AA9
A
158 163Right-handed alpha
Helix 10
AB1
A
164 170Right-handed 310
Helix 11
AB2
A
176 201Right-handed alpha
Helix 12
AB3
A
205 217Right-handed alpha
Helix 13
AB4
A
221 254Right-handed alpha
Helix 14
AB5
A
254 264Right-handed alpha
Helix 15
AB6
A
267 279Right-handed alpha
Helix 16
AB7
A
311 316Right-handed alpha
Helix 17
AB8
A
342 346Right-handed 310
Helix 18
AB9
A
349 368Right-handed alpha
Helix 19
AC1
A
376 380Right-handed 310
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There are 3 sheets in PDB entry 6J84. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
33 37parallel
Strand 3
A
44 47anti-parallel
Strand 4
A
307 310parallel
Strand 5
A
289 291anti-parallel
Strand 6
A
62 63anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
395 397anti-parallel
Strand 3
A
372 373anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 297first strand
Strand 2
A
300 302anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il