Analysis of interatomic Contacts of Structural Units in PDB entry:
6J87


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J87 entry

There are 2 chains in PDB entry 6J87 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4TRP 398
B
 THR 4TRP 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 6J87. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 31Right-handed alpha
Helix 2
AA2
A
49 59Right-handed alpha
Helix 3
AA3
A
64 68Right-handed 310
Helix 4
AA4
A
82 87Right-handed 310
Helix 5
AA5
A
90 97Right-handed alpha
Helix 6
AA6
A
99 104Right-handed alpha
Helix 7
AA7
A
104 110Right-handed alpha
Helix 8
AA8
A
111 130Right-handed alpha
Helix 9
AA9
A
135 139Right-handed alpha
Helix 10
AB1
A
139 153Right-handed alpha
Helix 11
AB2
A
155 157Right-handed 310
Helix 12
AB3
A
158 171Right-handed alpha
Helix 13
AB4
A
176 200Right-handed alpha
Helix 14
AB5
A
205 218Right-handed alpha
Helix 15
AB6
A
221 238Right-handed alpha
Helix 16
AB7
A
238 254Right-handed alpha
Helix 17
AB8
A
254 264Right-handed alpha
Helix 18
AB9
A
267 279Right-handed alpha
Helix 19
AC1
A
311 316Right-handed alpha
Helix 20
AC2
A
342 346Right-handed 310
Helix 21
AC3
A
349 368Right-handed alpha
Helix 22
AC4
A
376 380Right-handed 310
Helix 23
AC5
B
22 31Right-handed alpha
Helix 24
AC6
B
49 59Right-handed alpha
Helix 25
AC7
B
65 70Right-handed 310
Helix 26
AC8
B
82 87Right-handed 310
Helix 27
AC9
B
90 97Right-handed alpha
Helix 28
AD1
B
99 104Right-handed alpha
Helix 29
AD2
B
104 110Right-handed alpha
Helix 30
AD3
B
111 130Right-handed alpha
Helix 31
AD4
B
135 139Right-handed alpha
Helix 32
AD5
B
139 153Right-handed alpha
Helix 33
AD6
B
155 157Right-handed 310
Helix 34
AD7
B
158 171Right-handed alpha
Helix 35
AD8
B
176 201Right-handed alpha
Helix 36
AD9
B
205 218Right-handed alpha
Helix 37
AE1
B
221 238Right-handed alpha
Helix 38
AE2
B
238 254Right-handed alpha
Helix 39
AE3
B
254 264Right-handed alpha
Helix 40
AE4
B
267 279Right-handed alpha
Helix 41
AE5
B
311 316Right-handed alpha
Helix 42
AE6
B
342 346Right-handed 310
Helix 43
AE7
B
349 368Right-handed alpha
Helix 44
AE8
B
376 380Right-handed 310
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There are 6 sheets in PDB entry 6J87. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
34 37parallel
Strand 3
A
44 47anti-parallel
Strand 4
A
307 310parallel
Strand 5
A
289 291anti-parallel
Strand 6
A
62 63anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
395 397anti-parallel
Strand 3
A
372 373anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 297first strand
Strand 2
A
300 302anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 9first strand
Strand 2
B
34 37parallel
Strand 3
B
44 47anti-parallel
Strand 4
B
307 310parallel
Strand 5
B
289 291anti-parallel
Strand 6
B
62 63anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 134first strand
Strand 2
B
395 397anti-parallel
Strand 3
B
372 373anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
295 297first strand
Strand 2
B
300 302anti-parallel
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