Analysis of interatomic Contacts of Structural Units in PDB entry:
6J8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J8F entry

There are 3 chains in PDB entry 6J8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 26THR 47
B
 ASP 70LEU 303
C
 GLU 446TYR 450
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6J8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 47Right-handed alpha
Helix 2
AA2
B
71 85Right-handed alpha
Helix 3
AA3
B
87 97Right-handed alpha
Helix 4
AA4
B
117 133Right-handed alpha
Helix 5
AA5
B
149 164Right-handed alpha
Helix 6
AA6
B
168 181Right-handed alpha
Helix 7
AA7
B
223 227Right-handed 310
Helix 8
AA8
B
235 250Right-handed alpha
Helix 9
AA9
B
282 286Right-handed alpha
Helix 10
AB1
B
286 302Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6J8F.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 233first strand
Strand 2
B
214 218anti-parallel
Strand 3
B
200 211anti-parallel
Strand 4
B
187 197anti-parallel
Strand 5
B
253 259anti-parallel
Strand 6
B
278 281anti-parallel
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