Analysis of interatomic Contacts of Structural Units in PDB entry:
6J8L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J8L entry

There are 2 chains in PDB entry 6J8L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 59ASN 190
B
 LEU 59ASN 190
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6J8L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 79Right-handed alpha
Helix 2
AA2
A
82 96Right-handed alpha
Helix 3
AA3
A
96 107Right-handed alpha
Helix 4
AA4
A
111 119Right-handed alpha
Helix 5
AA5
A
121 131Right-handed 310
Helix 6
AA6
A
133 152Right-handed alpha
Helix 7
AA7
A
154 162Right-handed alpha
Helix 8
AA8
A
163 174Right-handed 310
Helix 9
AA9
A
176 188Right-handed alpha
Helix 10
AB1
B
60 79Right-handed alpha
Helix 11
AB2
B
82 95Right-handed alpha
Helix 12
AB3
B
96 107Right-handed alpha
Helix 13
AB4
B
111 119Right-handed alpha
Helix 14
AB5
B
120 125Right-handed alpha
Helix 15
AB6
B
126 131Right-handed 310
Helix 16
AB7
B
133 152Right-handed alpha
Helix 17
AB8
B
154 162Right-handed alpha
Helix 18
AB9
B
163 174Right-handed 310
Helix 19
AC1
B
176 189Right-handed alpha
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There are no sheets in PDB entry 6J8L
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il