Analysis of interatomic Contacts of Structural Units in PDB entry:
6J8V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J8V entry

There are 4 chains in PDB entry 6J8V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL -5LEU 258
B
 ASP -4GLN 327
C
 ASP -2LEU 258
D
 ASP -3GLN 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 60 helices in PDB entry 6J8V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-4 19Right-handed alpha
Helix 2
AA2
A
22 31Right-handed alpha
Helix 3
AA3
A
32 43Right-handed alpha
Helix 4
AA4
A
48 75Right-handed alpha
Helix 5
AA5
A
80 103Right-handed alpha
Helix 6
AA6
A
106 116Right-handed alpha
Helix 7
AA7
A
116 130Right-handed alpha
Helix 8
AA8
A
134 146Right-handed alpha
Helix 9
AA9
A
146 161Right-handed alpha
Helix 10
AB1
A
166 190Right-handed alpha
Helix 11
AB2
A
200 206Right-handed alpha
Helix 12
AB3
A
210 231Right-handed alpha
Helix 13
AB4
A
235 237Right-handed 310
Helix 14
AB5
A
238 252Right-handed alpha
Helix 15
AB6
A
253 258Right-handed 310
Helix 16
AB7
B
-3 19Right-handed alpha
Helix 17
AB8
B
22 31Right-handed alpha
Helix 18
AB9
B
32 43Right-handed alpha
Helix 19
AC1
B
48 75Right-handed alpha
Helix 20
AC2
B
80 103Right-handed alpha
Helix 21
AC3
B
107 116Right-handed alpha
Helix 22
AC4
B
116 130Right-handed alpha
Helix 23
AC5
B
134 146Right-handed alpha
Helix 24
AC6
B
146 161Right-handed alpha
Helix 25
AC7
B
166 193Right-handed alpha
Helix 26
AC8
B
199 206Right-handed alpha
Helix 27
AC9
B
210 231Right-handed alpha
Helix 28
AD1
B
237 252Right-handed alpha
Helix 29
AD2
B
253 258Right-handed 310
Helix 30
AD3
B
314 316Right-handed 310
Helix 31
AD4
B
317 326Right-handed alpha
Helix 32
AD5
C
-1 20Right-handed alpha
Helix 33
AD6
C
22 31Right-handed alpha
Helix 34
AD7
C
32 43Right-handed alpha
Helix 35
AD8
C
48 75Right-handed alpha
Helix 36
AD9
C
80 103Right-handed alpha
Helix 37
AE1
C
106 116Right-handed alpha
Helix 38
AE2
C
116 129Right-handed alpha
Helix 39
AE3
C
134 146Right-handed alpha
Helix 40
AE4
C
146 161Right-handed alpha
Helix 41
AE5
C
166 194Right-handed alpha
Helix 42
AE6
C
199 206Right-handed alpha
Helix 43
AE7
C
210 231Right-handed alpha
Helix 44
AE8
C
235 237Right-handed 310
Helix 45
AE9
C
238 252Right-handed alpha
Helix 46
AF1
C
254 258Right-handed 310
Helix 47
AF2
D
-2 19Right-handed alpha
Helix 48
AF3
D
22 31Right-handed alpha
Helix 49
AF4
D
32 43Right-handed alpha
Helix 50
AF5
D
48 75Right-handed alpha
Helix 51
AF6
D
80 103Right-handed alpha
Helix 52
AF7
D
107 116Right-handed alpha
Helix 53
AF8
D
116 130Right-handed alpha
Helix 54
AF9
D
134 146Right-handed alpha
Helix 55
AG1
D
146 161Right-handed alpha
Helix 56
AG2
D
166 193Right-handed alpha
Helix 57
AG3
D
199 206Right-handed alpha
Helix 58
AG4
D
210 231Right-handed alpha
Helix 59
AG5
D
237 252Right-handed alpha
Helix 60
AG6
D
254 258Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 6J8V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 273first strand
Strand 2
B
276 281anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
285 291first strand
Strand 2
B
294 302anti-parallel
Strand 3
B
305 312anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
288 291first strand
Strand 2
D
294 297anti-parallel
Strand 3
D
309 312anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il