Analysis of interatomic Contacts of Structural Units in PDB entry:
6J92


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J92 entry

There are 2 chains in PDB entry 6J92 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 28ASN 260
B
 SER 28PRO 236
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6J92. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 42Right-handed alpha
Helix 2
AA2
A
50 55Right-handed alpha
Helix 3
AA3
A
65 68Right-handed 310
Helix 4
AA4
A
118 129Right-handed alpha
Helix 5
AA5
A
161 165Right-handed 310
Helix 6
AA6
A
187 191Right-handed 310
Helix 7
AA7
A
238 244Right-handed alpha
Helix 8
AA8
A
250 260Right-handed alpha
Helix 9
AA9
B
35 41Right-handed alpha
Helix 10
AB1
B
50 55Right-handed alpha
Helix 11
AB2
B
65 68Right-handed 310
Helix 12
AB3
B
118 129Right-handed alpha
Helix 13
AB4
B
161 165Right-handed 310
Helix 14
AB5
B
187 191Right-handed 310
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There are 5 sheets in PDB entry 6J92. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
77 81anti-parallel
Strand 3
A
70 74anti-parallel
Strand 4
A
59 63anti-parallel
Strand 5
A
99 102anti-parallel
Strand 6
A
30 33anti-parallel
Strand 7
A
230 234parallel
Strand 8
B
230 234anti-parallel
Strand 9
B
30 33parallel
Strand 10
B
99 102anti-parallel
Strand 11
B
59 63anti-parallel
Strand 12
B
70 74anti-parallel
Strand 13
B
77 81anti-parallel
Strand 14
B
87 89anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
95 96anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 112first strand
Strand 2
A
116 117first strand
Strand 3
A
135 150first strand
Strand 4
A
171 186anti-parallel
Strand 5
A
197 204anti-parallel
Strand 6
A
210 228anti-parallel
Strand 7
A
116 117anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 49first strand
Strand 2
B
95 96anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 112first strand
Strand 2
B
116 117first strand
Strand 3
B
135 150first strand
Strand 4
B
172 186anti-parallel
Strand 5
B
197 204anti-parallel
Strand 6
B
210 228anti-parallel
Strand 7
B
116 117anti-parallel
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