Analysis of interatomic Contacts of Structural Units in PDB entry:
6J94


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J94 entry

There are 2 chains in PDB entry 6J94 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 124ILE 580
B
 ASN 125LEU 581
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 6J94. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
128 140Right-handed alpha
Helix 2
AA2
A
157 166Right-handed alpha
Helix 3
AA3
A
168 170Right-handed 310
Helix 4
AA4
A
174 185Right-handed alpha
Helix 5
AA5
A
193 205Right-handed alpha
Helix 6
AA6
A
206 208Right-handed 310
Helix 7
AA7
A
209 237Right-handed alpha
Helix 8
AA8
A
243 261Right-handed alpha
Helix 9
AA9
A
271 287Right-handed alpha
Helix 10
AB1
A
299 301Right-handed 310
Helix 11
AB2
A
302 334Right-handed alpha
Helix 12
AB3
A
350 358Right-handed alpha
Helix 13
AB4
A
363 379Right-handed alpha
Helix 14
AB5
A
379 396Right-handed alpha
Helix 15
AB6
A
396 411Right-handed alpha
Helix 16
AB7
A
419 424Right-handed alpha
Helix 17
AB8
A
424 438Right-handed alpha
Helix 18
AB9
A
469 475Right-handed alpha
Helix 19
AC1
A
486 490Right-handed 310
Helix 20
AC2
A
511 515Right-handed 310
Helix 21
AC3
A
518 536Right-handed alpha
Helix 22
AC4
B
128 140Right-handed alpha
Helix 23
AC5
B
157 166Right-handed alpha
Helix 24
AC6
B
168 170Right-handed 310
Helix 25
AC7
B
174 185Right-handed alpha
Helix 26
AC8
B
193 205Right-handed alpha
Helix 27
AC9
B
206 208Right-handed 310
Helix 28
AD1
B
209 237Right-handed alpha
Helix 29
AD2
B
243 261Right-handed alpha
Helix 30
AD3
B
271 288Right-handed alpha
Helix 31
AD4
B
299 301Right-handed 310
Helix 32
AD5
B
302 334Right-handed alpha
Helix 33
AD6
B
350 359Right-handed alpha
Helix 34
AD7
B
363 379Right-handed alpha
Helix 35
AD8
B
379 396Right-handed alpha
Helix 36
AD9
B
396 411Right-handed alpha
Helix 37
AE1
B
417 424Right-handed alpha
Helix 38
AE2
B
424 438Right-handed alpha
Helix 39
AE3
B
469 475Right-handed alpha
Helix 40
AE4
B
486 490Right-handed 310
Helix 41
AE5
B
511 515Right-handed 310
Helix 42
AE6
B
518 536Right-handed alpha
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There are 9 sheets in PDB entry 6J94. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 147first strand
Strand 2
A
150 155anti-parallel
Strand 3
A
464 468parallel
Strand 4
A
443 448anti-parallel
Strand 5
A
172 173anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 242first strand
Strand 2
A
563 568anti-parallel
Strand 3
A
537 541anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
B
294 296anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 454first strand
Strand 2
A
457 459anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
550 552first strand
Strand 2
A
556 558anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 147first strand
Strand 2
B
150 155anti-parallel
Strand 3
B
464 468parallel
Strand 4
B
443 448anti-parallel
Strand 5
B
172 173anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 242first strand
Strand 2
B
563 568anti-parallel
Strand 3
B
537 541anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
452 454first strand
Strand 2
B
457 459anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
550 552first strand
Strand 2
B
556 558anti-parallel
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