Analysis of interatomic Contacts of Structural Units in PDB entry:
6J9B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J9B entry

There are 6 chains in PDB entry 6J9B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 89SER 194
C
 A 1 C 15
B
 A 1 G 15
D
 ARG 89SER 194
F
 A 1 C 15
E
 A 1 G 15
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 6J9B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
97 102Right-handed alpha
Helix 2
AA2
A
110 118Right-handed alpha
Helix 3
AA3
A
160 168Right-handed alpha
Helix 4
AA4
D
98 102Right-handed 310
Helix 5
AA5
D
110 118Right-handed alpha
Helix 6
AA6
D
160 168Right-handed alpha
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There are 2 sheets in PDB entry 6J9B. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 95first strand
Strand 2
A
174 179anti-parallel
Strand 3
A
186 191anti-parallel
Strand 4
A
127 133parallel
Strand 5
A
139 149anti-parallel
Strand 6
A
152 158anti-parallel
Strand 7
A
107 108anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
90 95first strand
Strand 2
D
174 179anti-parallel
Strand 3
D
186 191anti-parallel
Strand 4
D
127 133parallel
Strand 5
D
139 149anti-parallel
Strand 6
D
152 158anti-parallel
Strand 7
D
106 109anti-parallel
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