Analysis of interatomic Contacts of Structural Units in PDB entry:
6J9C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J9C entry

There are 6 chains in PDB entry 6J9C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 163GLY 273
B
 G 1 T 15
C
 C 1 T 15
D
 SER 160ASN 271
E
 G 1 T 15
F
 C 1 T 15
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 6J9C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
189 197Right-handed alpha
Helix 2
AA2
A
239 247Right-handed alpha
Helix 3
AA3
D
189 196Right-handed alpha
Helix 4
AA4
D
240 247Right-handed alpha
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There are 3 sheets in PDB entry 6J9C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 174first strand
Strand 2
A
253 259anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 188first strand
Strand 2
A
231 237anti-parallel
Strand 3
A
218 228anti-parallel
Strand 4
A
206 211anti-parallel
Strand 5
A
265 266parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
167 174first strand
Strand 2
D
253 259anti-parallel
Strand 3
D
264 266anti-parallel
Strand 4
D
206 212parallel
Strand 5
D
218 228anti-parallel
Strand 6
D
231 237anti-parallel
Strand 7
D
185 187anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il