Analysis of interatomic Contacts of Structural Units in PDB entry:
6J9D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J9D entry

There are 2 chains in PDB entry 6J9D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 23GLN 327
B
 ILE 23GLU 321
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6J9D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 42Right-handed alpha
Helix 2
AA2
A
54 67Right-handed alpha
Helix 3
AA3
A
68 72Right-handed 310
Helix 4
AA4
A
82 87Right-handed 310
Helix 5
AA5
A
107 126Right-handed alpha
Helix 6
AA6
A
139 152Right-handed alpha
Helix 7
AA7
A
154 156Right-handed 310
Helix 8
AA8
A
168 178Right-handed alpha
Helix 9
AA9
A
181 185Right-handed 310
Helix 10
AB1
A
228 245Right-handed alpha
Helix 11
AB2
A
249 266Right-handed alpha
Helix 12
AB3
A
309 327Right-handed alpha
Helix 13
AB4
B
29 42Right-handed alpha
Helix 14
AB5
B
54 67Right-handed alpha
Helix 15
AB6
B
68 72Right-handed 310
Helix 16
AB7
B
82 86Right-handed 310
Helix 17
AB8
B
139 152Right-handed alpha
Helix 18
AB9
B
163 179Right-handed alpha
Helix 19
AC1
B
181 185Right-handed 310
Helix 20
AC2
B
224 245Right-handed alpha
Helix 21
AC3
B
249 256Right-handed alpha
Helix 22
AC4
B
259 265Right-handed alpha
Helix 23
AC5
B
279 283Right-handed 310
Helix 24
AC6
B
309 321Right-handed alpha
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There are 6 sheets in PDB entry 6J9D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
48 51parallel
Strand 3
A
24 26parallel
Strand 4
A
91 94parallel
Strand 5
A
132 135parallel
Strand 6
A
158 160parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 190first strand
Strand 2
A
198 199anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 276first strand
Strand 2
A
288 296anti-parallel
Strand 3
A
299 303anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 79first strand
Strand 2
B
47 51parallel
Strand 3
B
24 26parallel
Strand 4
B
91 94parallel
Strand 5
B
132 135parallel
Strand 6
B
158 160parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 190first strand
Strand 2
B
198 199anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
269 274first strand
Strand 2
B
290 296anti-parallel
Strand 3
B
299 303anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il