Analysis of interatomic Contacts of Structural Units in PDB entry:
6J9F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6J9F entry

There are 9 chains in PDB entry 6J9F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 11	GLY 231
B	LEU 9	PHE 230
C	SER 3	GLU 1382
D	MET 1	ARG 1371
E	VAL 6	ALA 76
G	G 1	C 29
H	G 1	C 29
I	A 9	A 20
J	ASN 2	LEU 67

There are 98 helices in PDB entry 6J9F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	50	Right-handed alpha
Helix 2	AA2	A	78	85	Right-handed alpha
Helix 3	AA3	A	86	88	Right-handed 310
Helix 4	AA4	A	153	158	Right-handed alpha
Helix 5	AA5	A	211	227	Right-handed alpha
Helix 6	AA6	A	228	230	Right-handed 310
Helix 7	AA7	B	34	50	Right-handed alpha
Helix 8	AA8	B	77	86	Right-handed alpha
Helix 9	AA9	B	111	115	Right-handed 310
Helix 10	AB1	B	211	228	Right-handed alpha
Helix 11	AB2	C	29	40	Right-handed alpha
Helix 12	AB3	C	53	60	Right-handed alpha
Helix 13	AB4	C	86	94	Right-handed alpha
Helix 14	AB5	C	211	219	Right-handed alpha
Helix 15	AB6	C	221	230	Right-handed alpha
Helix 16	AB7	C	276	285	Right-handed alpha
Helix 17	AB8	C	297	301	Right-handed 310
Helix 18	AB9	C	324	335	Right-handed alpha
Helix 19	AC1	C	351	358	Right-handed alpha
Helix 20	AC2	C	364	377	Right-handed alpha
Helix 21	AC3	C	386	396	Right-handed alpha
Helix 22	AC4	C	404	416	Right-handed alpha
Helix 23	AC5	C	437	447	Right-handed alpha
Helix 24	AC6	C	451	465	Right-handed alpha
Helix 25	AC7	C	483	507	Right-handed alpha
Helix 26	AC8	C	516	520	Right-handed 310
Helix 27	AC9	C	523	536	Right-handed alpha
Helix 28	AD1	C	547	556	Right-handed alpha
Helix 29	AD2	C	579	583	Right-handed 310
Helix 30	AD3	C	684	688	Right-handed 310
Helix 31	AD4	C	703	714	Right-handed alpha
Helix 32	AD5	C	732	737	Right-handed alpha
Helix 33	AD6	C	849	853	Right-handed alpha
Helix 34	AD7	C	887	892	Right-handed alpha
Helix 35	AD8	C	971	1006	Right-handed alpha
Helix 36	AD9	C	1053	1078	Right-handed alpha
Helix 37	AE1	C	1122	1126	Right-handed 310
Helix 38	AE2	C	1142	1148	Right-handed alpha
Helix 39	AE3	C	1150	1175	Right-handed alpha
Helix 40	AE4	C	1178	1191	Right-handed alpha
Helix 41	AE5	C	1209	1218	Right-handed alpha
Helix 42	AE6	C	1233	1244	Right-handed alpha
Helix 43	AE7	C	1304	1308	Right-handed 310
Helix 44	AE8	C	1313	1323	Right-handed alpha
Helix 45	AE9	C	1325	1331	Right-handed alpha
Helix 46	AF1	C	1341	1353	Right-handed alpha
Helix 47	AF2	C	1362	1373	Right-handed alpha
Helix 48	AF3	D	26	34	Right-handed alpha
Helix 49	AF4	D	96	101	Right-handed alpha
Helix 50	AF5	D	122	128	Right-handed alpha
Helix 51	AF6	D	131	140	Right-handed alpha
Helix 52	AF7	D	161	173	Right-handed alpha
Helix 53	AF8	D	181	191	Right-handed alpha
Helix 54	AF9	D	193	208	Right-handed alpha
Helix 55	AG1	D	210	231	Right-handed alpha
Helix 56	AG2	D	233	236	Right-handed 310
Helix 57	AG3	D	264	285	Right-handed alpha
Helix 58	AG4	D	288	308	Right-handed alpha
Helix 59	AG5	D	370	377	Right-handed alpha
Helix 60	AG6	D	377	389	Right-handed alpha
Helix 61	AG7	D	393	403	Right-handed alpha
Helix 62	AG8	D	406	416	Right-handed alpha
Helix 63	AG9	D	430	432	Right-handed 310
Helix 64	AH1	D	453	458	Right-handed alpha
Helix 65	AH2	D	473	483	Right-handed alpha
Helix 66	AH3	D	505	514	Right-handed alpha
Helix 67	AH4	D	529	538	Right-handed alpha
Helix 68	AH5	D	574	580	Right-handed alpha
Helix 69	AH6	D	581	583	Right-handed 310
Helix 70	AH7	D	589	593	Right-handed 310
Helix 71	AH8	D	598	612	Right-handed alpha
Helix 72	AH9	D	615	637	Right-handed alpha
Helix 73	AI1	D	650	671	Right-handed alpha
Helix 74	AI2	D	675	704	Right-handed alpha
Helix 75	AI3	D	721	729	Right-handed alpha
Helix 76	AI4	D	734	743	Right-handed alpha
Helix 77	AI5	D	769	805	Right-handed alpha
Helix 78	AI6	D	835	840	Right-handed alpha
Helix 79	AI7	D	867	876	Right-handed alpha
Helix 80	AI8	D	897	902	Right-handed alpha
Helix 81	AI9	D	917	926	Right-handed alpha
Helix 82	AJ1	D	927	931	Right-handed 310
Helix 83	AJ2	D	1140	1149	Right-handed alpha
Helix 84	AJ3	D	1217	1225	Right-handed alpha
Helix 85	AJ4	D	1227	1246	Right-handed alpha
Helix 86	AJ5	D	1251	1262	Right-handed alpha
Helix 87	AJ6	D	1281	1294	Right-handed alpha
Helix 88	AJ7	D	1309	1316	Right-handed alpha
Helix 89	AJ8	D	1321	1325	Right-handed 310
Helix 90	AJ9	D	1328	1340	Right-handed alpha
Helix 91	AK1	D	1349	1355	Right-handed alpha
Helix 92	AK2	D	1364	1371	Right-handed alpha
Helix 93	AK3	E	8	13	Right-handed alpha
Helix 94	AK4	E	15	31	Right-handed alpha
Helix 95	AK5	E	47	57	Right-handed alpha
Helix 96	AK6	E	61	75	Right-handed alpha
Helix 97	AK7	J	41	45	Right-handed alpha
Helix 98	AK8	J	46	61	Right-handed alpha

There are 37 sheets in PDB entry 6J9F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	23	31	anti-parallel
Strand 3	A	198	206	anti-parallel
Strand 4	A	179	188	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	116	first strand
Strand 2	A	97	102	anti-parallel
Strand 3	A	141	148	anti-parallel
Strand 4	A	53	61	anti-parallel
Strand 5	A	169	170	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	91	first strand
Strand 2	A	122	124	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	111	first strand
Strand 2	A	129	133	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	17	first strand
Strand 2	B	23	27	anti-parallel
Strand 3	B	197	206	anti-parallel
Strand 4	B	179	189	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	61	first strand
Strand 2	B	139	148	anti-parallel
Strand 3	B	98	104	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	121	123	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	152	first strand
Strand 2	B	174	175	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	15	first strand
Strand 2	C	1224	1225	parallel
Strand 3	C	728	729	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	80	first strand
Strand 2	C	98	109	anti-parallel
Strand 3	C	122	123	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	80	first strand
Strand 2	C	98	109	anti-parallel
Strand 3	C	127	133	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	142	first strand
Strand 2	C	147	150	anti-parallel
Strand 3	C	540	542	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	479	482	first strand
Strand 2	C	152	156	anti-parallel
Strand 3	C	558	559	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	164	first strand
Strand 2	C	177	182	anti-parallel
Strand 3	C	189	192	anti-parallel
Strand 4	C	200	202	anti-parallel
Strand 5	C	209	210	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	245	first strand
Strand 2	C	232	236	anti-parallel
Strand 3	C	339	342	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	586	587	first strand
Strand 2	C	602	603	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	608	609	first strand
Strand 2	C	615	622	anti-parallel
Strand 3	C	627	634	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	608	609	first strand
Strand 2	C	615	622	anti-parallel
Strand 3	C	680	682	anti-parallel
Strand 4	C	644	645	parallel
Strand 5	C	662	665	anti-parallel
Strand 6	C	670	673	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	750	755	first strand
Strand 2	C	759	764	anti-parallel
Strand 3	C	779	781	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	786	787	first strand
Strand 2	C	793	794	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	797	798	first strand
Strand 2	C	813	814	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1251	1252	first strand
Strand 2	C	1267	1276	anti-parallel
Strand 3	C	1106	1109	anti-parallel
Strand 4	C	1115	1121	anti-parallel
Strand 5	C	844	848	parallel
Strand 6	C	1137	1139	anti-parallel
Strand 7	C	828	833	parallel
Strand 8	C	1267	1276	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	859	870	first strand
Strand 2	C	1087	1099	anti-parallel
Strand 3	C	955	964	anti-parallel
Strand 4	C	905	906	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	911	913	first strand
Strand 2	C	947	948	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	916	918	first strand
Strand 2	C	942	944	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1377	1380	first strand
Strand 2	D	20	24	anti-parallel
Strand 3	D	1342	1343	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	112	first strand
Strand 2	D	238	243	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	146	first strand
Strand 2	D	178	179	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	365	369	first strand
Strand 2	D	434	442	parallel
Strand 3	D	421	425	anti-parallel
Strand 4	D	465	469	anti-parallel
Strand 5	D	350	357	anti-parallel
Strand 6	D	447	449	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	548	556	first strand
Strand 2	D	565	573	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	707	710	first strand
Strand 2	D	713	716	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	821	823	first strand
Strand 2	D	882	885	anti-parallel
Strand 3	D	844	845	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	959	963	first strand
Strand 2	D	982	987	anti-parallel
Strand 3	D	996	999	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	967	969	first strand
Strand 2	D	975	977	anti-parallel
Strand 3	D	1003	1005	anti-parallel
Strand 4	D	1020	1021	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1164	1168	first strand
Strand 2	D	1177	1180	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1279	1280	first strand
Strand 2	D	1264	1267	anti-parallel
Strand 3	D	1303	1305	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	5	6	first strand
Strand 2	J	14	17	anti-parallel
Strand 3	J	21	27	anti-parallel
Strand 4	J	33	40	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6J9F

Analysis of interatomic Contacts of Structural Units in PDB entry:
6J9F