Analysis of interatomic Contacts of Structural Units in PDB entry:
6J9H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J9H entry

There are 4 chains in PDB entry 6J9H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 22GLU 50
B
 MET 69LEU 303
C
 LYS 25GLU 50
D
 MET 69LEU 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6J9H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 48Right-handed alpha
Helix 2
AA2
B
70 85Right-handed alpha
Helix 3
AA3
B
87 96Right-handed alpha
Helix 4
AA4
B
117 132Right-handed alpha
Helix 5
AA5
B
149 164Right-handed alpha
Helix 6
AA6
B
168 181Right-handed alpha
Helix 7
AA7
B
223 227Right-handed 310
Helix 8
AA8
B
235 250Right-handed alpha
Helix 9
AA9
B
282 286Right-handed alpha
Helix 10
AB1
B
286 302Right-handed alpha
Helix 11
AB2
C
26 48Right-handed alpha
Helix 12
AB3
D
70 85Right-handed alpha
Helix 13
AB4
D
87 96Right-handed alpha
Helix 14
AB5
D
117 132Right-handed alpha
Helix 15
AB6
D
149 164Right-handed alpha
Helix 16
AB7
D
168 181Right-handed alpha
Helix 17
AB8
D
223 227Right-handed 310
Helix 18
AB9
D
235 250Right-handed alpha
Helix 19
AC1
D
282 286Right-handed alpha
Helix 20
AC2
D
286 302Right-handed alpha
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There are 2 sheets in PDB entry 6J9H. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 233first strand
Strand 2
B
214 218anti-parallel
Strand 3
B
200 211anti-parallel
Strand 4
B
186 197anti-parallel
Strand 5
B
253 259anti-parallel
Strand 6
B
278 281anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
229 233first strand
Strand 2
D
214 218anti-parallel
Strand 3
D
200 211anti-parallel
Strand 4
D
187 197anti-parallel
Strand 5
D
253 259anti-parallel
Strand 6
D
278 281anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il