Analysis of interatomic Contacts of Structural Units in PDB entry:
6J9N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J9N entry

There are 2 chains in PDB entry 6J9N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 511GLU 659
B
 MSE 1ILE 117
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6J9N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
512 541Right-handed alpha
Helix 2
AA2
A
549 562Right-handed alpha
Helix 3
AA3
A
574 578Right-handed 310
Helix 4
AA4
A
591 596Right-handed alpha
Helix 5
AA5
A
599 601Right-handed 310
Helix 6
AA6
A
609 611Right-handed 310
Helix 7
AA7
A
618 623Right-handed alpha
Helix 8
AA8
A
624 628Right-handed 310
Helix 9
AA9
A
629 641Right-handed alpha
Helix 10
AB1
A
645 653Right-handed alpha
Helix 11
AB2
B
19 32Right-handed alpha
Helix 12
AB3
B
38 42Right-handed 310
Helix 13
AB4
B
46 51Right-handed alpha
Helix 14
AB5
B
64 78Right-handed alpha
Helix 15
AB6
B
92 96Right-handed alpha
Helix 16
AB7
B
102 111Right-handed alpha
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There are 2 sheets in PDB entry 6J9N. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
584 588first strand
Strand 2
A
603 607anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 60first strand
Strand 2
B
3 12anti-parallel
Strand 3
B
83 91anti-parallel
Strand 4
B
112 117anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il